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The map label for this gene is fni

Identifier: 154686534

GI number: 154686534

Start: 2199000

End: 2200049

Strand: Reverse

Name: fni

Synonym: RBAM_021020

Alternate gene names: 154686534

Gene position: 2200049-2199000 (Counterclockwise)

Preceding gene: 154686535

Following gene: 154686533

Centisome position: 56.14

GC content: 51.14

Gene sequence:

>1050_bases
GTGACACGAGCAGAACGAAAAAGAGAACATATAAATCATGCGCTGTCTACCGGCCAAAACCGGGAAACGGGGCTTGATGA
TATTACGTTTGTTCATGTCAGCCTACCGAACCTAGCATTGGAAAAAGTGGATATATCAACGAAAATCGGCGGACTCACAA
GCAGTTCGCCGATTTTTATCAATGCGATGACAGGCGGCGGCGGACAGCTTACATACGAAATTAACAGATCGCTGGCAAGA
GCTGCGCGCAAAGCCGGCATGCCGCTGGCTGTCGGTTCGCAAATGTCAGCTTTAAAAGATCCCTCCGAACGGTGTTCTTA
TGAGATCGTCAGAAAAGAGAATCCGGACGGGCTGATATTTGCCAATTTAGGCAGCGAGGCGGATGCCGAGCAGGCGAAAA
TGGCAGTTGATATGATTCAAGCAGACGCCCTCCAGATTCATTTAAATGTGATTCAGGAGATCGTCATGCCAGAGGGTGAC
AGAAGCTTTACTGGCGCTCTCGGCCGTATTGAGCGGATTGCGGCGGAAGCGGGAGTTCCCGTTTTTGTCAAAGAAGTCGG
CTTCGGAATGAGCAGGGAATCGGCACGGCAGTTATTTGATGCTGGCGCAGCAGCAGTTGATGCCGGCGGATACGGCGGTA
CAAATTTCTCTAAGATCGAAAATATGCGCAGAGAGAAGGCGCTTCAATTTTTTAATACGTGGGGAATTTCCACTGCCGCA
AGCTTAGCGGAAATCCACTCGCTCTCCGCTGATCAATCAATTATCGCATCCGGCGGGCTGCAAAGTGCCCTGGATGTCGC
CAAATCGATTGCCCTCGGCGCTTCCGGCGCGGGAATGGCGGGCACTTTCCTGAAAGCTCTCACCTCTAAAGGAGAAGAGG
GCCTGTTTGACGAGATGACGGCGCTTTTGCAAGAGCTGAAAATGATTATGACCGCCCTCGGATGCCAATCGGTTTCCCAA
CTGCAAAAGGCGCCTTTGGTCATAAAAGGTGACACACATCACTGGCTTTCTGAACGGGGAATTGACACATCCCGTTTCAG
CAGACGTTAA

Upstream 100 bases:

>100_bases
TCCGCCAATACCAGGCGAAAGAAGAGCCGAGCACCGGCTTCCAGCTTGGCGATTTAATCGGAGACAAGCTTAATAAATTA
AAATAAATTGGTGATAAAAC

Downstream 100 bases:

>100_bases
AAGGCATGCGAACCCGCATGCCTTTTTCTGTTTTTTACGATTTTCTTTTTCGGAATTCCCCGTTTTGCTCAAGGCTTGTC
GCTCCTTTATGGTGAATCGA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MTRAERKREHINHALSTGQNRETGLDDITFVHVSLPNLALEKVDISTKIGGLTSSSPIFINAMTGGGGQLTYEINRSLAR
AARKAGMPLAVGSQMSALKDPSERCSYEIVRKENPDGLIFANLGSEADAEQAKMAVDMIQADALQIHLNVIQEIVMPEGD
RSFTGALGRIERIAAEAGVPVFVKEVGFGMSRESARQLFDAGAAAVDAGGYGGTNFSKIENMRREKALQFFNTWGISTAA
SLAEIHSLSADQSIIASGGLQSALDVAKSIALGASGAGMAGTFLKALTSKGEEGLFDEMTALLQELKMIMTALGCQSVSQ
LQKAPLVIKGDTHHWLSERGIDTSRFSRR

Sequences:

>Translated_349_residues
MTRAERKREHINHALSTGQNRETGLDDITFVHVSLPNLALEKVDISTKIGGLTSSSPIFINAMTGGGGQLTYEINRSLAR
AARKAGMPLAVGSQMSALKDPSERCSYEIVRKENPDGLIFANLGSEADAEQAKMAVDMIQADALQIHLNVIQEIVMPEGD
RSFTGALGRIERIAAEAGVPVFVKEVGFGMSRESARQLFDAGAAAVDAGGYGGTNFSKIENMRREKALQFFNTWGISTAA
SLAEIHSLSADQSIIASGGLQSALDVAKSIALGASGAGMAGTFLKALTSKGEEGLFDEMTALLQELKMIMTALGCQSVSQ
LQKAPLVIKGDTHHWLSERGIDTSRFSRR
>Mature_348_residues
TRAERKREHINHALSTGQNRETGLDDITFVHVSLPNLALEKVDISTKIGGLTSSSPIFINAMTGGGGQLTYEINRSLARA
ARKAGMPLAVGSQMSALKDPSERCSYEIVRKENPDGLIFANLGSEADAEQAKMAVDMIQADALQIHLNVIQEIVMPEGDR
SFTGALGRIERIAAEAGVPVFVKEVGFGMSRESARQLFDAGAAAVDAGGYGGTNFSKIENMRREKALQFFNTWGISTAAS
LAEIHSLSADQSIIASGGLQSALDVAKSIALGASGAGMAGTFLKALTSKGEEGLFDEMTALLQELKMIMTALGCQSVSQL
QKAPLVIKGDTHHWLSERGIDTSRFSRR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_BACA2 (A7Z638)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421695.1
- ProteinModelPortal:   A7Z638
- SMR:   A7Z638
- STRING:   A7Z638
- EnsemblBacteria:   EBBACT00000004701
- GeneID:   5462250
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_021020
- eggNOG:   COG1304
- GeneTree:   EBGT00050000001841
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   BAMY326423:RBAM_021020-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 37230; Mature: 37099

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAERKREHINHALSTGQNRETGLDDITFVHVSLPNLALEKVDISTKIGGLTSSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHHCCCCCCCCCEEE
NAMTGGGGQLTYEINRSLARAARKAGMPLAVGSQMSALKDPSERCSYEIVRKENPDGLIF
EEEECCCCEEEEHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHCCEEEEECCCCCCEEE
ANLGSEADAEQAKMAVDMIQADALQIHLNVIQEIVMPEGDRSFTGALGRIERIAAEAGVP
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
VFVKEVGFGMSRESARQLFDAGAAAVDAGGYGGTNFSKIENMRREKALQFFNTWGISTAA
EEEHHHCCCCCHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
SLAEIHSLSADQSIIASGGLQSALDVAKSIALGASGAGMAGTFLKALTSKGEEGLFDEMT
HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
ALLQELKMIMTALGCQSVSQLQKAPLVIKGDTHHWLSERGIDTSRFSRR
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
TRAERKREHINHALSTGQNRETGLDDITFVHVSLPNLALEKVDISTKIGGLTSSSPIFI
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHHCCCCCCCCCEEE
NAMTGGGGQLTYEINRSLARAARKAGMPLAVGSQMSALKDPSERCSYEIVRKENPDGLIF
EEEECCCCEEEEHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHCCEEEEECCCCCCEEE
ANLGSEADAEQAKMAVDMIQADALQIHLNVIQEIVMPEGDRSFTGALGRIERIAAEAGVP
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
VFVKEVGFGMSRESARQLFDAGAAAVDAGGYGGTNFSKIENMRREKALQFFNTWGISTAA
EEEHHHCCCCCHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
SLAEIHSLSADQSIIASGGLQSALDVAKSIALGASGAGMAGTFLKALTSKGEEGLFDEMT
HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
ALLQELKMIMTALGCQSVSQLQKAPLVIKGDTHHWLSERGIDTSRFSRR
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA