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The map label for this gene is ypsC [H]

Identifier: 154686464

GI number: 154686464

Start: 2135319

End: 2136467

Strand: Reverse

Name: ypsC [H]

Synonym: RBAM_020320

Alternate gene names: 154686464

Gene position: 2136467-2135319 (Counterclockwise)

Preceding gene: 154686465

Following gene: 154686463

Centisome position: 54.52

GC content: 47.26

Gene sequence:

>1149_bases
ATGAAGAAGTACACACTAATAGCGACGGCGCCGATGGGAATCGAAGCGATCGTCGCCAAAGAAGTGCGTGATTTAGGTTA
TGAATGCAAAGTAGACAACGGAAAAGTCATTTTTGAAGGAGATGCGCTTGCGATCTGCCGCGCTAACTTATGGCTGCGGA
CGGCTGACCGCATTAAAGTACAGGTCGCCGAGTTTCAGGCGAAAACGTTTGATGAGCTGTTTGAAAAAACAAAAGCGATT
GACTGGCGCGCGTACATTCCGGAAAACGCAAAGTTCCCCGTTATCGGAAAGTCCGTGAAATCAGTGCTTGCCAGTGTGCC
TGACTGCCAGCGGATCGTCAAAAAGGCGATAGCGGAAAAGCTGAAACTGCAATCAGGAAAACAAAATGAATGGATTGAAG
AAACGGGCCCCGAGTATAAGGTGGAGATTTCCCTTTTAAAAGATAAAGCCGTGCTTACACTGGATTCATCAGGAACAGGC
CTTCACAAACGGGGATACAGGGTTGATCAGGGAGGAGCTCCGATTAAAGAGACGCTCGCTGCCGCGTTAATTCAGTTAAC
CAACTGGACGCCTGACCGTCCGTTCGTCGATCCGTTCTGCGGTTCCGGCACGATCGCCATTGAAGCCGCTTTAATCGGAC
AAAACATTGCTCCCGGTTTTAACCGTGATTTTGTTTCAGAAGACTGGGAATGGATCGGAAAAGAACTGTGGGACAAGGCG
CGTCTTGAAGTGGAAGAAAAGGCGAACTATGATCAGCCGCTGCAGATCTTTGCCAGTGACGTAGATCACCGGATGGTAAA
CATCGCCAAAGAAAACGCAGAAGAAGCGGGACTTGGTGACCTGATCGAATGCAAGCAAATGCGGGTGCAGGATTTTACGA
CGAAGCTCGAATACGGCGTAATCGTCGGAAACCCTCCGTACGGCGAACGGCTCGGCGAAAAAAGGGAAGTCGAGCAGATG
TATAAAGAAATGGGCCGGGCATTTGAATCTCTTGATACATGGTCTGTCTACATGTTAACGTCAAATGAACAATTTGAAGA
GGTCTACGGAAGAAAAGCAACCAAAAAACGGAAGCTCTTTAACGGTTTTATCAAAACGGATTATTATCAGTACTGGGCTA
AAAAGAAAAAAACAATTTCAAAAATATAG

Upstream 100 bases:

>100_bases
AGAACGTTAAACATTATTGATATGACAAATTAGAGCTCTCCTTTAAAGGGGAGCTTTTATCTTGAATGAAACGAAAGCTT
AAAAGAGACAGGGTGATACG

Downstream 100 bases:

>100_bases
TACCTTTTATAGTGGATTTTTGTGGTAATATTGATTTTGAAAATAGGCTATGAATAGATTTTCAAGTTGGAGCCGAAAAA
CAGGGACTTAAGTTCCTGTT

Product: YpsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKVQVAEFQAKTFDELFEKTKAI
DWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIAEKLKLQSGKQNEWIEETGPEYKVEISLLKDKAVLTLDSSGTG
LHKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKA
RLEVEEKANYDQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGVIVGNPPYGERLGEKREVEQM
YKEMGRAFESLDTWSVYMLTSNEQFEEVYGRKATKKRKLFNGFIKTDYYQYWAKKKKTISKI

Sequences:

>Translated_382_residues
MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKVQVAEFQAKTFDELFEKTKAI
DWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIAEKLKLQSGKQNEWIEETGPEYKVEISLLKDKAVLTLDSSGTG
LHKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKA
RLEVEEKANYDQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGVIVGNPPYGERLGEKREVEQM
YKEMGRAFESLDTWSVYMLTSNEQFEEVYGRKATKKRKLFNGFIKTDYYQYWAKKKKTISKI
>Mature_382_residues
MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKVQVAEFQAKTFDELFEKTKAI
DWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIAEKLKLQSGKQNEWIEETGPEYKVEISLLKDKAVLTLDSSGTG
LHKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKA
RLEVEEKANYDQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGVIVGNPPYGERLGEKREVEQM
YKEMGRAFESLDTWSVYMLTSNEQFEEVYGRKATKKRKLFNGFIKTDYYQYWAKKKKTISKI

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=343, Percent_Identity=31.1953352769679, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43423; Mature: 43423

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKV
CCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCEEEEECCEEEEEECCCEEEECCHHEE
QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIAEK
EHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHH
LKLQSGKQNEWIEETGPEYKVEISLLKDKAVLTLDSSGTGLHKRGYRVDQGGAPIKETLA
HHHCCCCCCCCHHHCCCCEEEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCHHHHHH
AALIQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKA
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RLEVEEKANYDQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGV
HCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHEEEE
IVGNPPYGERLGEKREVEQMYKEMGRAFESLDTWSVYMLTSNEQFEEVYGRKATKKRKLF
EECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHH
NGFIKTDYYQYWAKKKKTISKI
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANLWLRTADRIKV
CCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCEEEEECCEEEEEECCCEEEECCHHEE
QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIAEK
EHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHH
LKLQSGKQNEWIEETGPEYKVEISLLKDKAVLTLDSSGTGLHKRGYRVDQGGAPIKETLA
HHHCCCCCCCCHHHCCCCEEEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCHHHHHH
AALIQLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKA
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RLEVEEKANYDQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGV
HCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHEEEE
IVGNPPYGERLGEKREVEQMYKEMGRAFESLDTWSVYMLTSNEQFEEVYGRKATKKRKLF
EECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHH
NGFIKTDYYQYWAKKKKTISKI
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]