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The map label for this gene is ypgR [H]

Identifier: 154686434

GI number: 154686434

Start: 2108455

End: 2109588

Strand: Reverse

Name: ypgR [H]

Synonym: RBAM_020020

Alternate gene names: 154686434

Gene position: 2109588-2108455 (Counterclockwise)

Preceding gene: 154686435

Following gene: 154686433

Centisome position: 53.84

GC content: 49.91

Gene sequence:

>1134_bases
ATGAAGATTAAATCAATAGAACCGACGCCGAGTCCGAACACGATGAAAGTGATTTTGACTGAAGAGCTTCCGGCAGGGAA
AAGCAACAATTACAAGCCCGATCAGGCAGATGATGCTCCGGTTGTCGTACGTGATATTTTAAACATTGAAGGAGTAAAGG
GCGTTTATCACGTTGCCGATTTCCTGGCTGTGGAGAGAAACGCACGTTTTGACTGGAAGGAAATTCTGCCTCAGGTCCGT
TCCGCTTTCGGAATGGAACATACGGAGCAGTCTGAGAGCCGTTCTGAACAGGAATCGTTCGGTGAAGTGAAGGTTTTCGT
ACAAATGTTCAGCGGAATCCCGATGCAGGTCAAATTGACGGACGGCGAACGTGAAGAACGCTTCGGCCTTCCGGAACGTT
TCCAAGAAGCCATTTTAAAGCTGCGTTCCGAAGCTTCAAATGTTGTATTTGAGCGGACTTGGAAAGAACAAGGCGTGCGC
TTCGGGGATTTTACCGAAATCGGACACGATGTCACAGAAGAGCTTCAGGCCGCCTACAGTGATGAGCGGCTCAAACGTCT
GACAGAAGCAGCCGCACAGCAAAAGGGTGAGGCCAGACCGGCAGTGCAGCGGAAAGCTTATAAAGTGACACTGGACATGC
TTGATGATGAAGACTGGAAACAGCGCTATGCCCATCTTGAGCAAATGGATCCGGGTGAAGACGATTTACCAGTATTGGAA
AAGGCGCTGCATGATCCGAAGACTTCGATCAGAAGACAAGCCGTCGTTTATTTGGGAATGATCGAAAAGCCGTCTGTGCT
TCCGCTGTTATACAAAGCGCTTGAAGACAAAACGGTGACGGTCAGAAGGACGGCGGGTGACTGTCTGTCGGATCTCGGCG
ATGCGAGCGCCATCCCGGCCATGATGAAATCGCTCAGTGACTCAAGCAAGCTCGTGCGCTGGCGCGCGGCCATGTTTTTA
TATGAAGTCGGCGATGAAAGCGCGCTGGAAGCATTAAAAGCGGCGGAAGACGATCCGGAATTCGAAGTCAGCCTGCAAGT
CAAAATGGCGATTGAACGGATTGAGCACGGAGAAGAGGCGAAAGGTTCAGTCTGGAAACAGATGACTGAAAGCAGAAAAA
AAGAACAGTTATAA

Upstream 100 bases:

>100_bases
CCAAAAAAGAGGCCGGCATTTGCAAAAGCTAAGCGGCGCAATAGAACGCTTGTGCCGACTATGTTAGAATAAGTGTCAGA
TTGCGCATAGGAGGACCAAT

Downstream 100 bases:

>100_bases
CAAAAAGGTGCGCCATGCACCTTTTTTATTTGAATTCACTTTTTATAAAAATTATTTAGAATATTGTTGAAAAATGATTC
AAAACTCTATATAGTAAGTA

Product: YpgR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVADFLAVERNARFDWKEILPQVR
SAFGMEHTEQSESRSEQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQEAILKLRSEASNVVFERTWKEQGVR
FGDFTEIGHDVTEELQAAYSDERLKRLTEAAAQQKGEARPAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLE
KALHDPKTSIRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIPAMMKSLSDSSKLVRWRAAMFL
YEVGDESALEALKAAEDDPEFEVSLQVKMAIERIEHGEEAKGSVWKQMTESRKKEQL

Sequences:

>Translated_377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVADFLAVERNARFDWKEILPQVR
SAFGMEHTEQSESRSEQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQEAILKLRSEASNVVFERTWKEQGVR
FGDFTEIGHDVTEELQAAYSDERLKRLTEAAAQQKGEARPAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLE
KALHDPKTSIRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIPAMMKSLSDSSKLVRWRAAMFL
YEVGDESALEALKAAEDDPEFEVSLQVKMAIERIEHGEEAKGSVWKQMTESRKKEQL
>Mature_377_residues
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVADFLAVERNARFDWKEILPQVR
SAFGMEHTEQSESRSEQESFGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQEAILKLRSEASNVVFERTWKEQGVR
FGDFTEIGHDVTEELQAAYSDERLKRLTEAAAQQKGEARPAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLE
KALHDPKTSIRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIPAMMKSLSDSSKLVRWRAAMFL
YEVGDESALEALKAAEDDPEFEVSLQVKMAIERIEHGEEAKGSVWKQMTESRKKEQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR014824
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS; PF08712 Nfu_N [H]

EC number: NA

Molecular weight: Translated: 42796; Mature: 42796

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50077 HEAT_REPEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVAD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
FLAVERNARFDWKEILPQVRSAFGMEHTEQSESRSEQESFGEVKVFVQMFSGIPMQVKLT
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEREERFGLPERFQEAILKLRSEASNVVFERTWKEQGVRFGDFTEIGHDVTEELQAAYS
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DERLKRLTEAAAQQKGEARPAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLE
HHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH
KALHDPKTSIRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIPA
HHHCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHCCHHHHHH
MMKSLSDSSKLVRWRAAMFLYEVGDESALEALKAAEDDPEFEVSLQVKMAIERIEHGEEA
HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCH
KGSVWKQMTESRKKEQL
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVAD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
FLAVERNARFDWKEILPQVRSAFGMEHTEQSESRSEQESFGEVKVFVQMFSGIPMQVKLT
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEREERFGLPERFQEAILKLRSEASNVVFERTWKEQGVRFGDFTEIGHDVTEELQAAYS
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DERLKRLTEAAAQQKGEARPAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLE
HHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH
KALHDPKTSIRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIPA
HHHCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHCCHHHHHH
MMKSLSDSSKLVRWRAAMFLYEVGDESALEALKAAEDDPEFEVSLQVKMAIERIEHGEEA
HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCH
KGSVWKQMTESRKKEQL
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]