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The map label for this gene is yocR [H]

Identifier: 154686341

GI number: 154686341

Start: 2026979

End: 2028316

Strand: Reverse

Name: yocR [H]

Synonym: RBAM_019090

Alternate gene names: 154686341

Gene position: 2028316-2026979 (Counterclockwise)

Preceding gene: 154686343

Following gene: 154686337

Centisome position: 51.76

GC content: 44.25

Gene sequence:

>1338_bases
GTGAAAGAAGCTAATCAATGGTCATCTAAGCTGGGATTTATTTTAGCTACGGCCGGCTCTGCAATCGGGCTCGGCGCAAT
ATGGAAGTTCCCTTACGTAGCGGGAACCAGCGGAGGCGGCGCTTTTCTGCTTATTTTTATTTTATTTACTGTTTTAATCG
GACTGCCGCTTTTGCTTGCTGAATTTATTATCGGCAGAAAAACACAAAAAAACGCCGTTGAATCCTATAAGGCGCTCGCG
CCGGGGAAAAAGTGGCACTGGATCGGATATCTCGGAATCATTACGTGTTTTATTCTATTATCCTTCTACAGCGTAGTGGG
GGGATGGATATTAATCTACATTATAAAAGGCTTTACAGGCGGCTTATCGCTTTCTTCGGGATTTGATACGTTATTTATCG
ATACCATTTCAAATCCTTATGCAGCCGTTTTCGGCCAGCTGCTGTTTATCGTGCTGACGATTTTAGTTGTGGCAAAAGGG
GTGAGCAGCGGCATTGAAAAAGTGAGCCAGGTGTTGATGCCGGCTCTGTTTATTCTGTTTATTCTCTTAATGATCCGCTC
CGTTACGCTGCATGATGCAGCAAAAGGATTAAAATTCTTTTTTATGCCTGATTTTGGCGCGATGGATGCCAATACTATTT
TATATGCGATGGGACAATCATTTTTCTCGTTAAGCGTCGGAGTGTCCGTAATGGTTACATACAGCGCATATTTAGAAAAA
GAAGAAAATATTGTTCAATCCGCCGTATCGGTGACGGTATTAAATGTCCTTGTTGCTGTGATGGCGGGAGTGGCGATTTT
TCCGGCGGTGTTTGCATTCGGCCTCAAGCCGGATCAAGGCCCGCAGCTTTTATTTAACGTGCTGCCGACCGTCTTTAATC
AAATGCCGTTGGGCATCGTGTTTTTACTCGCCTTTTTGCTGCTGTTTTTATTTGCGACGCTGACATCGGCTTTTTCAATG
CTTGAAATTTTAGTTGCTGTTTTGTCAAAAGGCGATTCGGCAAAACGGAAGCGGTATGCATGGATCGGGGGACTTGCTAT
ATTTATTGTCGGGGTCCCTTCGGCGCTGTCGTACGGAATCTTGAGTGATGTTTCTATTTTTCACCGCAGTATTTTTGACG
CTGCGGATTTTCTGGTCAGCAATGTCTTAATGCCGCTGGGCGCGCTTTTAATTGCCGTTTTCGTACCGTTGAAAATCCCG
AAACAGATGCTGTTTGACGAACTGAAAAGCGGTTCCGGTATAAAACGAAAATGGTTTGCAGTCTGGCTCCTATTAATCCG
TTATGTGGCTCCTGTAGCCATTATTATCGTTTTTCTGCACGTCCTTGGTATTTTTTAA

Upstream 100 bases:

>100_bases
GTTTTCAATAAAATTATTATGTAAACTAACATCTTCTTGACTATTCAGACATATATTCTTACAATTGATTTTTATACTGA
AATGAATTGGGAGTGCTGAA

Downstream 100 bases:

>100_bases
ACCAAAAGAAGCAGGCCCCCGTTCAAGACGGGGGCTTTTTTAATAAAGCGGCCATATTACGCGGTGCGCTTGCTCGAACC
GTTTCTCCGCCTCCCGCCAA

Product: YocR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKEANQWSSKLGFILATAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLAEFIIGRKTQKNAVESYKALA
PGKKWHWIGYLGIITCFILLSFYSVVGGWILIYIIKGFTGGLSLSSGFDTLFIDTISNPYAAVFGQLLFIVLTILVVAKG
VSSGIEKVSQVLMPALFILFILLMIRSVTLHDAAKGLKFFFMPDFGAMDANTILYAMGQSFFSLSVGVSVMVTYSAYLEK
EENIVQSAVSVTVLNVLVAVMAGVAIFPAVFAFGLKPDQGPQLLFNVLPTVFNQMPLGIVFLLAFLLLFLFATLTSAFSM
LEILVAVLSKGDSAKRKRYAWIGGLAIFIVGVPSALSYGILSDVSIFHRSIFDAADFLVSNVLMPLGALLIAVFVPLKIP
KQMLFDELKSGSGIKRKWFAVWLLLIRYVAPVAIIIVFLHVLGIF

Sequences:

>Translated_445_residues
MKEANQWSSKLGFILATAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLAEFIIGRKTQKNAVESYKALA
PGKKWHWIGYLGIITCFILLSFYSVVGGWILIYIIKGFTGGLSLSSGFDTLFIDTISNPYAAVFGQLLFIVLTILVVAKG
VSSGIEKVSQVLMPALFILFILLMIRSVTLHDAAKGLKFFFMPDFGAMDANTILYAMGQSFFSLSVGVSVMVTYSAYLEK
EENIVQSAVSVTVLNVLVAVMAGVAIFPAVFAFGLKPDQGPQLLFNVLPTVFNQMPLGIVFLLAFLLLFLFATLTSAFSM
LEILVAVLSKGDSAKRKRYAWIGGLAIFIVGVPSALSYGILSDVSIFHRSIFDAADFLVSNVLMPLGALLIAVFVPLKIP
KQMLFDELKSGSGIKRKWFAVWLLLIRYVAPVAIIIVFLHVLGIF
>Mature_445_residues
MKEANQWSSKLGFILATAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLAEFIIGRKTQKNAVESYKALA
PGKKWHWIGYLGIITCFILLSFYSVVGGWILIYIIKGFTGGLSLSSGFDTLFIDTISNPYAAVFGQLLFIVLTILVVAKG
VSSGIEKVSQVLMPALFILFILLMIRSVTLHDAAKGLKFFFMPDFGAMDANTILYAMGQSFFSLSVGVSVMVTYSAYLEK
EENIVQSAVSVTVLNVLVAVMAGVAIFPAVFAFGLKPDQGPQLLFNVLPTVFNQMPLGIVFLLAFLLLFLFATLTSAFSM
LEILVAVLSKGDSAKRKRYAWIGGLAIFIVGVPSALSYGILSDVSIFHRSIFDAADFLVSNVLMPLGALLIAVFVPLKIP
KQMLFDELKSGSGIKRKWFAVWLLLIRYVAPVAIIIVFLHVLGIF

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=390, Percent_Identity=26.1538461538462, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI21361581, Length=376, Percent_Identity=25, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI194018524, Length=320, Percent_Identity=29.375, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI7657587, Length=391, Percent_Identity=25.3196930946292, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI188528618, Length=375, Percent_Identity=25.6, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI171184408, Length=377, Percent_Identity=24.4031830238727, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI171184406, Length=377, Percent_Identity=24.4031830238727, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI171184404, Length=377, Percent_Identity=24.4031830238727, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI51468073, Length=296, Percent_Identity=26.0135135135135, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=26.8852459016393, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI92859670, Length=408, Percent_Identity=26.7156862745098, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=26.7326732673267, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI4507041, Length=491, Percent_Identity=23.8289205702648, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=25.1677852348993, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI197276623, Length=348, Percent_Identity=25.5747126436782, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI54607094, Length=348, Percent_Identity=25.5747126436782, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI134304856, Length=381, Percent_Identity=26.246719160105, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI289191351, Length=393, Percent_Identity=23.9185750636132, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI4557046, Length=393, Percent_Identity=23.9185750636132, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI289191377, Length=393, Percent_Identity=23.9185750636132, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI21361693, Length=121, Percent_Identity=33.8842975206612, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=24, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI55749589, Length=286, Percent_Identity=26.2237762237762, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI197276625, Length=123, Percent_Identity=34.1463414634146, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI5032097, Length=122, Percent_Identity=27.8688524590164, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI218563756, Length=122, Percent_Identity=27.8688524590164, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555248, Length=425, Percent_Identity=25.1764705882353, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25146584, Length=411, Percent_Identity=24.5742092457421, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17554804, Length=471, Percent_Identity=23.7791932059448, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71995588, Length=411, Percent_Identity=22.1411192214112, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71998244, Length=289, Percent_Identity=28.0276816608997, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI133952791, Length=260, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=108, Percent_Identity=31.4814814814815, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534083, Length=121, Percent_Identity=28.099173553719, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17136952, Length=402, Percent_Identity=25.6218905472637, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI281364394, Length=385, Percent_Identity=25.7142857142857, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI28574704, Length=385, Percent_Identity=25.7142857142857, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI17136950, Length=385, Percent_Identity=25.7142857142857, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI28574702, Length=385, Percent_Identity=25.7142857142857, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24762620, Length=375, Percent_Identity=25.8666666666667, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24639514, Length=506, Percent_Identity=23.5177865612648, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI221329674, Length=506, Percent_Identity=23.5177865612648, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24655079, Length=298, Percent_Identity=29.1946308724832, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639516, Length=296, Percent_Identity=26.3513513513513, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI45550877, Length=427, Percent_Identity=25.7611241217799, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI45551183, Length=458, Percent_Identity=25.3275109170306, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281364136, Length=526, Percent_Identity=23.384030418251, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI45551088, Length=305, Percent_Identity=23.9344262295082, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24652942, Length=305, Percent_Identity=23.9344262295082, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24661428, Length=307, Percent_Identity=25.4071661237785, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24582567, Length=301, Percent_Identity=26.9102990033223, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI281363702, Length=300, Percent_Identity=23.3333333333333, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281363700, Length=300, Percent_Identity=23.3333333333333, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19921352, Length=323, Percent_Identity=25.3869969040248, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24584353, Length=323, Percent_Identity=25.3869969040248, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281365034, Length=320, Percent_Identity=25, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19921936, Length=309, Percent_Identity=23.3009708737864, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24639853, Length=325, Percent_Identity=25.8461538461538, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24654186, Length=125, Percent_Identity=33.6, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48297; Mature: 48297

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEANQWSSKLGFILATAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLA
CCCCHHHHHHHCCHHEECCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
EFIIGRKTQKNAVESYKALAPGKKWHWIGYLGIITCFILLSFYSVVGGWILIYIIKGFTG
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLSLSSGFDTLFIDTISNPYAAVFGQLLFIVLTILVVAKGVSSGIEKVSQVLMPALFILF
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLMIRSVTLHDAAKGLKFFFMPDFGAMDANTILYAMGQSFFSLSVGVSVMVTYSAYLEK
HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EENIVQSAVSVTVLNVLVAVMAGVAIFPAVFAFGLKPDQGPQLLFNVLPTVFNQMPLGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH
FLLAFLLLFLFATLTSAFSMLEILVAVLSKGDSAKRKRYAWIGGLAIFIVGVPSALSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
LSDVSIFHRSIFDAADFLVSNVLMPLGALLIAVFVPLKIPKQMLFDELKSGSGIKRKWFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
VWLLLIRYVAPVAIIIVFLHVLGIF
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEANQWSSKLGFILATAGSAIGLGAIWKFPYVAGTSGGGAFLLIFILFTVLIGLPLLLA
CCCCHHHHHHHCCHHEECCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
EFIIGRKTQKNAVESYKALAPGKKWHWIGYLGIITCFILLSFYSVVGGWILIYIIKGFTG
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLSLSSGFDTLFIDTISNPYAAVFGQLLFIVLTILVVAKGVSSGIEKVSQVLMPALFILF
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLMIRSVTLHDAAKGLKFFFMPDFGAMDANTILYAMGQSFFSLSVGVSVMVTYSAYLEK
HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EENIVQSAVSVTVLNVLVAVMAGVAIFPAVFAFGLKPDQGPQLLFNVLPTVFNQMPLGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH
FLLAFLLLFLFATLTSAFSMLEILVAVLSKGDSAKRKRYAWIGGLAIFIVGVPSALSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
LSDVSIFHRSIFDAADFLVSNVLMPLGALLIAVFVPLKIPKQMLFDELKSGSGIKRKWFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
VWLLLIRYVAPVAIIIVFLHVLGIF
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]