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The map label for this gene is yocM [H]

Identifier: 154686332

GI number: 154686332

Start: 2020299

End: 2020781

Strand: Reverse

Name: yocM [H]

Synonym: RBAM_019000

Alternate gene names: 154686332

Gene position: 2020781-2020299 (Counterclockwise)

Preceding gene: 154686335

Following gene: 154686330

Centisome position: 51.57

GC content: 42.03

Gene sequence:

>483_bases
ATGGATTTCGATAAGATGAAGCAGTGGATGGAAATGGCGCAAAACATGTCCGGCGGCGACTTTTGGAAAAACGTTTTTGA
TGATGAACAACTGAAATCATTTCAAAACGGCCATTCTCATTTTCCCTTTCAACAGGGAGATGGGCAAATGAGAAGAAATG
AGGATGCTTTTCCTCTTATAGATATTGTGGAAACCCATGATGAGCTCCAATTTTTACTGTATCTGCCCGGCTACCGGAAA
CAAGATGTTCAGCTGCTGTCCTACGGAGAATATATCGTCGTAAAAGGCACGAGAAAATCCTTTTTTAATGAACAGGATTT
TAAACAGAAGACCGGAAAATACGGCGATTTTGAAAAAAAACTCGACCTTCCGCATTCCGCTCAGGGAACGAAGGGAATGC
AGGCGGTATTCAAAGACGGGATTTTATATATATCGATTGCTAAACATCTGGGGGATGCAAGCCAGATCATTATCGAAGGC
TGA

Upstream 100 bases:

>100_bases
AATATTGATATATGGAGTTGGTTGAACCACAGGCAAACCTCCTTTAATACAGGTGTATGCCGGCTGTTATGACCGTATGC
TTAGACAGGGGGCGATAAAA

Downstream 100 bases:

>100_bases
TCTTGTTTGCTGTGCCATCTATCAGATCTGAATCATCGATACTCATGATAGGGATGACGACAACAGTGCAATCACCGTTT
TGTTCACCGTACCCTTCATT

Product: YocM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQNGHSHFPFQQGDGQMRRNEDAFPLIDIVETHDELQFLLYLPGYRK
QDVQLLSYGEYIVVKGTRKSFFNEQDFKQKTGKYGDFEKKLDLPHSAQGTKGMQAVFKDGILYISIAKHLGDASQIIIEG

Sequences:

>Translated_160_residues
MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQNGHSHFPFQQGDGQMRRNEDAFPLIDIVETHDELQFLLYLPGYRK
QDVQLLSYGEYIVVKGTRKSFFNEQDFKQKTGKYGDFEKKLDLPHSAQGTKGMQAVFKDGILYISIAKHLGDASQIIIEG
>Mature_160_residues
MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQNGHSHFPFQQGDGQMRRNEDAFPLIDIVETHDELQFLLYLPGYRK
QDVQLLSYGEYIVVKGTRKSFFNEQDFKQKTGKYGDFEKKLDLPHSAQGTKGMQAVFKDGILYISIAKHLGDASQIIIEG

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18558; Mature: 18558

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQNGHSHFPFQQGDGQMRRNEDAFPLI
CCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
DIVETHDELQFLLYLPGYRKQDVQLLSYGEYIVVKGTRKSFFNEQDFKQKTGKYGDFEKK
HHHHHHHHEEEEEECCCCCCCCCEEEECCCEEEEECCHHHHCCHHHHHHHCCCCCCCHHH
LDLPHSAQGTKGMQAVFKDGILYISIAKHLGDASQIIIEG
CCCCCCCCCCHHHHHHHHCCEEEEEHHHHCCCCCEEEECC
>Mature Secondary Structure
MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQNGHSHFPFQQGDGQMRRNEDAFPLI
CCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
DIVETHDELQFLLYLPGYRKQDVQLLSYGEYIVVKGTRKSFFNEQDFKQKTGKYGDFEKK
HHHHHHHHEEEEEECCCCCCCCCEEEECCCEEEEECCHHHHCCHHHHHHHCCCCCCCHHH
LDLPHSAQGTKGMQAVFKDGILYISIAKHLGDASQIIIEG
CCCCCCCCCCHHHHHHHHCCEEEEEHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]