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The map label for this gene is yocH [H]

Identifier: 154686328

GI number: 154686328

Start: 2016586

End: 2017455

Strand: Reverse

Name: yocH [H]

Synonym: RBAM_018960

Alternate gene names: 154686328

Gene position: 2017455-2016586 (Counterclockwise)

Preceding gene: 154686329

Following gene: 154686327

Centisome position: 51.48

GC content: 44.37

Gene sequence:

>870_bases
ATGAAGAAGACGATTATGTCCTTTGTCGCAGTTGCAGCAATTTCAACAACTGCATTTGGAGCTCACGCTTCTGCTAAAGA
AATCACGGTGCAAAAGGGTGACACGCTCTGGGGGATCTCGCAAAAAAACGGAGTGAACCTAAAGGACTTAAAAGAATGGA
ATCAGTTATCTTCTGATTTAATCATTGAAGGAGAGAAACTGACTATTTCTTCAGTAGAAACAACCACATCTGGGCAGTAC
ACAGTGAAGCAGGGCGACAGCCTCTGGAAAATTGCTCAGAAATTCGGAACATCAGTCGGCAATCTGAAAAGCTTGAATAA
CTTGCAATCAGATATAATTTACGCAGGCACAACGTTAAATGTGAAAGGTCAGGCTCAGGCTGCACAGCCGGCTCAAGAAG
CCAGCCATCCGCAAACTGAACAAAAACCAGCTGCCGAGACAGAACAGCCGAAACAAGAAGCTGTCAAAAACGAGCAGCCT
AAACAAGAACCTGTTCAAGAACAACAACCTAAACAAGAAGCGAAGGCTGTCGAAGCAAAACAGCAGCCTGTTCAATCAAA
TACAAACCAACAAGAGCCTAAAAAGCAGCTGACAATGACTGCAACTGCTTACTCTGCTAACGACGGCGGCATTTCCGGTG
TAACGGCAACCGGTGTTGACTTAAACAAAAACCCTGATGCAAAAGTCATCGCGGTAGACCCTAGTGTCATTCCGCTTGGC
TCTAAGGTTTATGTTGAAGGTTACGGAGTGGCAACAGCAGCAGATACAGGCGGCGCAATTAAAGGAAATAAAATTGACGT
ATTTGTTGCAAAGAAAAGTGACGCTAACAACTGGGGCGTCAGAACAGTAAATGTTAAAGTATTAGACTAG

Upstream 100 bases:

>100_bases
TAATCTAATTCAAATCGTTTTGTTATTGAACTGACATTTTCATATGTTACGATATCACCTGTTAGCCGCCAATAAAAAGC
TAACAAGGGAGGATTTACTT

Downstream 100 bases:

>100_bases
TTTCATATAGAGATGAAGAACACAAGGCGAAATGCTTTGTGTTCTTTTTTTCTTCCCTTTTTTGACTGTATATAATCGTT
ATATGCGGAAAAAGAAAAAG

Product: YocH

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNQLSSDLIIEGEKLTISSVETTTSGQY
TVKQGDSLWKIAQKFGTSVGNLKSLNNLQSDIIYAGTTLNVKGQAQAAQPAQEASHPQTEQKPAAETEQPKQEAVKNEQP
KQEPVQEQQPKQEAKAVEAKQQPVQSNTNQQEPKKQLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLG
SKVYVEGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD

Sequences:

>Translated_289_residues
MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNQLSSDLIIEGEKLTISSVETTTSGQY
TVKQGDSLWKIAQKFGTSVGNLKSLNNLQSDIIYAGTTLNVKGQAQAAQPAQEASHPQTEQKPAAETEQPKQEAVKNEQP
KQEPVQEQQPKQEAKAVEAKQQPVQSNTNQQEPKKQLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLG
SKVYVEGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD
>Mature_289_residues
MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNQLSSDLIIEGEKLTISSVETTTSGQY
TVKQGDSLWKIAQKFGTSVGNLKSLNNLQSDIIYAGTTLNVKGQAQAAQPAQEASHPQTEQKPAAETEQPKQEAVKNEQP
KQEPVQEQQPKQEAKAVEAKQQPVQSNTNQQEPKKQLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLG
SKVYVEGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 30763; Mature: 30763

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNQLSSDL
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCE
IIEGEKLTISSVETTTSGQYTVKQGDSLWKIAQKFGTSVGNLKSLNNLQSDIIYAGTTLN
EEECCEEEEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCEEEECEEEE
VKGQAQAAQPAQEASHPQTEQKPAAETEQPKQEAVKNEQPKQEPVQEQQPKQEAKAVEAK
ECCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHH
QQPVQSNTNQQEPKKQLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLG
HCCHHCCCCCCCHHHHEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEECCCEEECC
SKVYVEGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD
CEEEEEECCEEEECCCCCCEECCEEEEEEEECCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDLKEWNQLSSDL
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCE
IIEGEKLTISSVETTTSGQYTVKQGDSLWKIAQKFGTSVGNLKSLNNLQSDIIYAGTTLN
EEECCEEEEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHCEEEECEEEE
VKGQAQAAQPAQEASHPQTEQKPAAETEQPKQEAVKNEQPKQEPVQEQQPKQEAKAVEAK
ECCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHH
QQPVQSNTNQQEPKKQLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLG
HCCHHCCCCCCCHHHHEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEECCCEEECC
SKVYVEGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD
CEEEEEECCEEEECCCCCCEECCEEEEEEEECCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]