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The map label for this gene is yobQ [H]

Identifier: 154686302

GI number: 154686302

Start: 1994245

End: 1995450

Strand: Reverse

Name: yobQ [H]

Synonym: RBAM_018700

Alternate gene names: 154686302

Gene position: 1995450-1994245 (Counterclockwise)

Preceding gene: 154686303

Following gene: 154686298

Centisome position: 50.92

GC content: 33.17

Gene sequence:

>1206_bases
ATGAAAAACAACTTAGAATATATCTCTCAATTGATTTATGACGCATACAATATCCCTCTTTTTATTTCCAATGAAAAATG
TCATTCCCTAACTAGCAGTGGCGAACAGCTGAAACATCCTCTTTTTGATTCAGTAGAAACATCTATAAACAGGCTCATTC
AACCAGACGATCAATATAACGTTCCTTTGATTAGAATAACAAACTATTTAGAAATATTTATCGTATTCCATCTATCTTCC
ATAGAAACAGTAATAATCGGACCTTTCACTTCCTTTGAAATGACCGAAAACAGCGTAAATGGTATTATGCATGACTATCA
TATTCCCTCTAGTTATCAGCAAGAGTTATACCATTATTACAGTCAATTAGAGCTGTTAAACCAAAAACAAATTGTATCGC
TTTGCTCGCTCACGTATTTTTTAATCTGCCAAGAGCCTCTTGAAGAAGAATTAGTGAGATCCCAATTAATGAATTTTGAC
GAAATTGAACCGGCTCATACTGAGCAACTAATACGGCATCATCGTCTTGAGGCTTCTTTTCATATGGATCACCGAATTGA
ACAGAAAATATGGCAATATGTAAGTGAAGGGAAGAAAGAAAAGCTGTTGCAGCATTTGGAAAGCATTAAAATGGAGGGCA
TGAGTCAACTTTCGAAAAAAAGCCACCTTCGTAACATTAAAAATCAAGTAATTATTTATATTGCACTTGGTACGAGAGCA
GCTATTGAAGGCGGTCTTTATCCTGAAATTGCCTATACAATGAGCCATATTAGCATTCAAAAAGTAGAAGAAACTTTCGA
CTTACAAAAAATTTTATTAATTGGTGATGACTTATTATTTTCATTAGTTGACCGTATGAATGAAAACAGGGAAAACACGC
ATTCTAAAGCTGTGAATGTTTGTAAAAACTATATATTCAATCATATTTTTGAGCAAATTTCGATAAAGGATTTAGCAGAC
CTAGTCCATTTAAATCCTGTTTACTTGTCTCAGCTCTTTAAAAAAGAAACAAACAAACCCCTTGGAAAATATATTCAAGA
AGAAAAAATAAAAGAGGCACAAAAATTACTTATCCAAACTGACTATTCTGTAGCCGACATTTGTATGCTGCTTCACTTTA
ATAACCAAAGCCACTTTTCAAGCATATTTAAAGACTATACTGGCATAACACCAAATCAATACCGAAAAAATCCACTCATT
CATTAA

Upstream 100 bases:

>100_bases
GACGCTATATAGGGAAGGTCTCTCATCAATCCAGGGACATCTTTATTTTTAATTCAAAAATGAAGGCGCTTTATAAATTT
GATATATCAGGAGTGGCAAA

Downstream 100 bases:

>100_bases
TTTATTCTTCACGAAAAACACTGCTAATCCATTACGTATTAGCAGTTTTTTCTTATTAGACATATTTAATTGTTCAACAG
ATTCAATTAACATTTTCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKNNLEYISQLIYDAYNIPLFISNEKCHSLTSSGEQLKHPLFDSVETSINRLIQPDDQYNVPLIRITNYLEIFIVFHLSS
IETVIIGPFTSFEMTENSVNGIMHDYHIPSSYQQELYHYYSQLELLNQKQIVSLCSLTYFLICQEPLEEELVRSQLMNFD
EIEPAHTEQLIRHHRLEASFHMDHRIEQKIWQYVSEGKKEKLLQHLESIKMEGMSQLSKKSHLRNIKNQVIIYIALGTRA
AIEGGLYPEIAYTMSHISIQKVEETFDLQKILLIGDDLLFSLVDRMNENRENTHSKAVNVCKNYIFNHIFEQISIKDLAD
LVHLNPVYLSQLFKKETNKPLGKYIQEEKIKEAQKLLIQTDYSVADICMLLHFNNQSHFSSIFKDYTGITPNQYRKNPLI
H

Sequences:

>Translated_401_residues
MKNNLEYISQLIYDAYNIPLFISNEKCHSLTSSGEQLKHPLFDSVETSINRLIQPDDQYNVPLIRITNYLEIFIVFHLSS
IETVIIGPFTSFEMTENSVNGIMHDYHIPSSYQQELYHYYSQLELLNQKQIVSLCSLTYFLICQEPLEEELVRSQLMNFD
EIEPAHTEQLIRHHRLEASFHMDHRIEQKIWQYVSEGKKEKLLQHLESIKMEGMSQLSKKSHLRNIKNQVIIYIALGTRA
AIEGGLYPEIAYTMSHISIQKVEETFDLQKILLIGDDLLFSLVDRMNENRENTHSKAVNVCKNYIFNHIFEQISIKDLAD
LVHLNPVYLSQLFKKETNKPLGKYIQEEKIKEAQKLLIQTDYSVADICMLLHFNNQSHFSSIFKDYTGITPNQYRKNPLI
H
>Mature_401_residues
MKNNLEYISQLIYDAYNIPLFISNEKCHSLTSSGEQLKHPLFDSVETSINRLIQPDDQYNVPLIRITNYLEIFIVFHLSS
IETVIIGPFTSFEMTENSVNGIMHDYHIPSSYQQELYHYYSQLELLNQKQIVSLCSLTYFLICQEPLEEELVRSQLMNFD
EIEPAHTEQLIRHHRLEASFHMDHRIEQKIWQYVSEGKKEKLLQHLESIKMEGMSQLSKKSHLRNIKNQVIIYIALGTRA
AIEGGLYPEIAYTMSHISIQKVEETFDLQKILLIGDDLLFSLVDRMNENRENTHSKAVNVCKNYIFNHIFEQISIKDLAD
LVHLNPVYLSQLFKKETNKPLGKYIQEEKIKEAQKLLIQTDYSVADICMLLHFNNQSHFSSIFKDYTGITPNQYRKNPLI
H

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=131, Percent_Identity=29.7709923664122, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 46991; Mature: 46991

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNLEYISQLIYDAYNIPLFISNEKCHSLTSSGEQLKHPLFDSVETSINRLIQPDDQYN
CCCCHHHHHHHHHHHHCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPLIRITNYLEIFIVFHLSSIETVIIGPFTSFEMTENSVNGIMHDYHIPSSYQQELYHYY
CCCEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHH
SQLELLNQKQIVSLCSLTYFLICQEPLEEELVRSQLMNFDEIEPAHTEQLIRHHRLEASF
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
HMDHRIEQKIWQYVSEGKKEKLLQHLESIKMEGMSQLSKKSHLRNIKNQVIIYIALGTRA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
AIEGGLYPEIAYTMSHISIQKVEETFDLQKILLIGDDLLFSLVDRMNENRENTHSKAVNV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CKNYIFNHIFEQISIKDLADLVHLNPVYLSQLFKKETNKPLGKYIQEEKIKEAQKLLIQT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
DYSVADICMLLHFNNQSHFSSIFKDYTGITPNQYRKNPLIH
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKNNLEYISQLIYDAYNIPLFISNEKCHSLTSSGEQLKHPLFDSVETSINRLIQPDDQYN
CCCCHHHHHHHHHHHHCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPLIRITNYLEIFIVFHLSSIETVIIGPFTSFEMTENSVNGIMHDYHIPSSYQQELYHYY
CCCEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHH
SQLELLNQKQIVSLCSLTYFLICQEPLEEELVRSQLMNFDEIEPAHTEQLIRHHRLEASF
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
HMDHRIEQKIWQYVSEGKKEKLLQHLESIKMEGMSQLSKKSHLRNIKNQVIIYIALGTRA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
AIEGGLYPEIAYTMSHISIQKVEETFDLQKILLIGDDLLFSLVDRMNENRENTHSKAVNV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CKNYIFNHIFEQISIKDLADLVHLNPVYLSQLFKKETNKPLGKYIQEEKIKEAQKLLIQT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
DYSVADICMLLHFNNQSHFSSIFKDYTGITPNQYRKNPLIH
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]