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The map label for this gene is ybcL [H]

Identifier: 154686287

GI number: 154686287

Start: 1977632

End: 1978807

Strand: Reverse

Name: ybcL [H]

Synonym: RBAM_018550

Alternate gene names: 154686287

Gene position: 1978807-1977632 (Counterclockwise)

Preceding gene: 154686288

Following gene: 154686285

Centisome position: 50.5

GC content: 49.91

Gene sequence:

>1176_bases
GTGCAAAATACCTGGAAGATTTACATTTTGGCAATTATCAGTTTTTTAGTGGGGACGTCTGAATATGTGATATCAGGGAT
GCTTGATAAAATTGCAGGTTCCTTGGGAGTTACTGTGGCAGCGGCAGGGCAGCTGATTACGATTTTTTCGCTTGTTTATG
CAATCGGAACGCCTGTCATAATGGCCCTTACAGCAAAACTGGACAGAAGGAAGCTCATGATCTATGCTCTGGGGCTGTTT
GTTATCGGGAATATCATTTCTTTCCTTGTGCAGGGATTCGGCTTATTTGCGGGAGCGCGGGTGATCATGGCGCTTGGAGC
AGGAACTGTGGTGGTCACCGCGCTTACGATCGCAGCAAAAATCGCTCCCCCGGGAAAACAGGCAAGTTCTCTCGCAACCG
TCATTATGGGGTTTACGGCGGCGCTCATTATCGGTGTTCCGATCGGAAGAACCGTGTCTGAAGCTTTTGGCTGGAAGGTG
GTTTTCGCCGGAATTGCGGCAATCGGAATCATTGCCATGCTTATTATACGTTTCGCGTTGCCTGAGATAAAAGGAGATAA
ACCGGTGCCGCTCATTCAGCAATTTTCTCTTTTGAAGAAACGAAAGGTGGCTGCCGGGCTGGCCATTACGTTTTTTTGGC
TCGGAGGCTATTCGGTTGCGTATACGTACCTTTCTCCGTATTTACTGAACGTCACTCATATCGGCAGCGGAATACTGAGT
ACATTGCTGCTTATTTTCGGTGTTGCAAGTCTTGCCGGTTCTAAAGCAGGCGGTTTCAGCGCAGACAAATGGGGGGCGCG
TATGACATTAACCGGCGGAATGGCGCTTCATGCTATCATGCTCATGTTATTGCCGTTTGTCACACATTCTGCTTTCGGAG
CGGCGGCAGTGCTTATTTTTTGGTCCTTCGCCGCCTGGTCATCTGGGCCTGCTCAGCAGTATCATTTGGCAACGATGGAG
CCTGAATCATCGGGTGTATTACTTGGCCTCAACCAGTCTGTGATGCAGCTGGCTATGGCGGCCGGAGCGGGCATCGGGGG
CATTGTTGTCACCCATCTGTCTCTTGCGTCTGTTACATGGATCGGAGCAGCGGGTGTTGTCATCGCGATGTGCGGCGTGC
TTTCACTTGCGTCGTTAACATCTGAAAAAACCTCATCTGAATACAGTGCAGAATAA

Upstream 100 bases:

>100_bases
ACACATCGACATATTGCGATTTGTTTCTGTTTGTTCAACTCTTTATATCGATATATCACAATATATCTTTATATAAATCA
TCAATGAAGGAGTGTGTCAG

Downstream 100 bases:

>100_bases
ACAAAAGCCTCGTTTCTCAGCTTGAGAAACGAGGCTTTTCACCTTGTCATTTTTCGCATTTTTTCAAGTTTACGCCGATT
GCGGCTCCGTTTCGGCTTGA

Product: YbcL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQNTWKIYILAIISFLVGTSEYVISGMLDKIAGSLGVTVAAAGQLITIFSLVYAIGTPVIMALTAKLDRRKLMIYALGLF
VIGNIISFLVQGFGLFAGARVIMALGAGTVVVTALTIAAKIAPPGKQASSLATVIMGFTAALIIGVPIGRTVSEAFGWKV
VFAGIAAIGIIAMLIIRFALPEIKGDKPVPLIQQFSLLKKRKVAAGLAITFFWLGGYSVAYTYLSPYLLNVTHIGSGILS
TLLLIFGVASLAGSKAGGFSADKWGARMTLTGGMALHAIMLMLLPFVTHSAFGAAAVLIFWSFAAWSSGPAQQYHLATME
PESSGVLLGLNQSVMQLAMAAGAGIGGIVVTHLSLASVTWIGAAGVVIAMCGVLSLASLTSEKTSSEYSAE

Sequences:

>Translated_391_residues
MQNTWKIYILAIISFLVGTSEYVISGMLDKIAGSLGVTVAAAGQLITIFSLVYAIGTPVIMALTAKLDRRKLMIYALGLF
VIGNIISFLVQGFGLFAGARVIMALGAGTVVVTALTIAAKIAPPGKQASSLATVIMGFTAALIIGVPIGRTVSEAFGWKV
VFAGIAAIGIIAMLIIRFALPEIKGDKPVPLIQQFSLLKKRKVAAGLAITFFWLGGYSVAYTYLSPYLLNVTHIGSGILS
TLLLIFGVASLAGSKAGGFSADKWGARMTLTGGMALHAIMLMLLPFVTHSAFGAAAVLIFWSFAAWSSGPAQQYHLATME
PESSGVLLGLNQSVMQLAMAAGAGIGGIVVTHLSLASVTWIGAAGVVIAMCGVLSLASLTSEKTSSEYSAE
>Mature_391_residues
MQNTWKIYILAIISFLVGTSEYVISGMLDKIAGSLGVTVAAAGQLITIFSLVYAIGTPVIMALTAKLDRRKLMIYALGLF
VIGNIISFLVQGFGLFAGARVIMALGAGTVVVTALTIAAKIAPPGKQASSLATVIMGFTAALIIGVPIGRTVSEAFGWKV
VFAGIAAIGIIAMLIIRFALPEIKGDKPVPLIQQFSLLKKRKVAAGLAITFFWLGGYSVAYTYLSPYLLNVTHIGSGILS
TLLLIFGVASLAGSKAGGFSADKWGARMTLTGGMALHAIMLMLLPFVTHSAFGAAAVLIFWSFAAWSSGPAQQYHLATME
PESSGVLLGLNQSVMQLAMAAGAGIGGIVVTHLSLASVTWIGAAGVVIAMCGVLSLASLTSEKTSSEYSAE

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=331, Percent_Identity=29.3051359516616, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787808, Length=363, Percent_Identity=26.7217630853994, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1786595, Length=255, Percent_Identity=25.0980392156863, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693198, Length=343, Percent_Identity=25.9475218658892, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI87082404, Length=267, Percent_Identity=25.8426966292135, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40543; Mature: 40543

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]