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The map label for this gene is yngJ [H]

Identifier: 154686272

GI number: 154686272

Start: 1927933

End: 1929075

Strand: Reverse

Name: yngJ [H]

Synonym: RBAM_018390

Alternate gene names: 154686272

Gene position: 1929075-1927933 (Counterclockwise)

Preceding gene: 154686273

Following gene: 154686271

Centisome position: 49.23

GC content: 51.01

Gene sequence:

>1143_bases
ATGAATTTTCAACTGACAAAAGAACAGCAGATGGTGCGCGAAATGGTCAGAGATTTCGCCAAAAATGAAATTGCCCCGAA
AGCCCATGAGGTTGATCAATCAGCCGTCTTCCCGATAGACACATTTAAAAAAATAGGCGAACTCGGGCTGCTCGGAATTC
CGTTTCCGGAAGAATACGGCGGGGCGGGCGGTGACACCATTTCATATGCAGCAGCGGTCGAAGAAATCGGAAAAGCCTGC
GGCAGCACGGGGCTGAGCTACGCGGCAGCCGTGTCACTCGGTGCAAGCCCATTATACTATTTCGGTACTGAACAGCAAAA
GCAAGAACATCTTATTCCGCTTGCTTCGGGAAAAGCGCTCGGATCATTCGGGCTGACGGAGCCGAATGCCGGTTCAGATG
CCGGCGGAACCCAGACAAAAGCCGAGAAAAAGGGCGGTGACTATGTGATAAACGGAGAGAAATGCTGGATCACAAACGCA
AATTACGCCCGCACGGTCATTGTCACCGCCGTTACGGGAAAGAACTCCGCCGGAAAACCGATCATTTCAGCTCTCATCGT
CCCGACAGACACACCGGGATTTACGATCACAAATCCGTACGACAAGATGGGTGTGAGAGGGTCGGATACGGCCGAGCTTG
TGCTGGAGGATGTCAGGGTGCCTGCCGATAACCTGCTCGGTGATCCTGAAAAAGGTTTTAAACAATTTTTATATACATTA
GACGGCGGGCGGATCTCGATTGCGGCACTGGCTGTCGGTATCGCTCAAGGCGCACTGGAGGCGTCGCTGTCATATGCGAA
GGAACGCAAGCAGTTCGGCAGTCCGATATCGTCATTTCAAGCCATTCAATTTAAGCTGGCCGATATGGCGATGGAAATTG
ACCTTGCCAGACAGATGGTGCTTAAAGCGGCATGGCTGAAGGATCAAAACCTGCCATTTACGAAAGAAGCTGCATTCGCT
AAGCTCTATGCTTCTGAAATGGCCGTCAGAACGTGCCTTCAGGCCATCCAAATTCATGGCGGTTCCGGTTATATGAAGGA
ATGCGGTGTCGAACGTATGCTTCGTGACGCAAAGCTGATGGAGATTGGCGAAGGAACGTCAGAAATTCAAAGAATGGTCA
TCGCAAGACAGCTTTTGAAGTGA

Upstream 100 bases:

>100_bases
TTTTGTAGCGGATGAGTCCGAATGTTCAGACTTCATTTGGATGGAATGAATAAAGACCCCCATTAATAAAATGTAGAAAG
CAGCAGAAGGAGGAAGGTTA

Downstream 100 bases:

>100_bases
AATGAAAACGTTTACTAAGACAGGGATGGAAGGGGGGCAGGTCATATGGCTGAACTTATCCATTTAACAGCCGGAAAGCT
GCTTGAGCGGACCGCGGAGC

Product: YngJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MNFQLTKEQQMVREMVRDFAKNEIAPKAHEVDQSAVFPIDTFKKIGELGLLGIPFPEEYGGAGGDTISYAAAVEEIGKAC
GSTGLSYAAAVSLGASPLYYFGTEQQKQEHLIPLASGKALGSFGLTEPNAGSDAGGTQTKAEKKGGDYVINGEKCWITNA
NYARTVIVTAVTGKNSAGKPIISALIVPTDTPGFTITNPYDKMGVRGSDTAELVLEDVRVPADNLLGDPEKGFKQFLYTL
DGGRISIAALAVGIAQGALEASLSYAKERKQFGSPISSFQAIQFKLADMAMEIDLARQMVLKAAWLKDQNLPFTKEAAFA
KLYASEMAVRTCLQAIQIHGGSGYMKECGVERMLRDAKLMEIGEGTSEIQRMVIARQLLK

Sequences:

>Translated_380_residues
MNFQLTKEQQMVREMVRDFAKNEIAPKAHEVDQSAVFPIDTFKKIGELGLLGIPFPEEYGGAGGDTISYAAAVEEIGKAC
GSTGLSYAAAVSLGASPLYYFGTEQQKQEHLIPLASGKALGSFGLTEPNAGSDAGGTQTKAEKKGGDYVINGEKCWITNA
NYARTVIVTAVTGKNSAGKPIISALIVPTDTPGFTITNPYDKMGVRGSDTAELVLEDVRVPADNLLGDPEKGFKQFLYTL
DGGRISIAALAVGIAQGALEASLSYAKERKQFGSPISSFQAIQFKLADMAMEIDLARQMVLKAAWLKDQNLPFTKEAAFA
KLYASEMAVRTCLQAIQIHGGSGYMKECGVERMLRDAKLMEIGEGTSEIQRMVIARQLLK
>Mature_380_residues
MNFQLTKEQQMVREMVRDFAKNEIAPKAHEVDQSAVFPIDTFKKIGELGLLGIPFPEEYGGAGGDTISYAAAVEEIGKAC
GSTGLSYAAAVSLGASPLYYFGTEQQKQEHLIPLASGKALGSFGLTEPNAGSDAGGTQTKAEKKGGDYVINGEKCWITNA
NYARTVIVTAVTGKNSAGKPIISALIVPTDTPGFTITNPYDKMGVRGSDTAELVLEDVRVPADNLLGDPEKGFKQFLYTL
DGGRISIAALAVGIAQGALEASLSYAKERKQFGSPISSFQAIQFKLADMAMEIDLARQMVLKAAWLKDQNLPFTKEAAFA
KLYASEMAVRTCLQAIQIHGGSGYMKECGVERMLRDAKLMEIGEGTSEIQRMVIARQLLK

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=379, Percent_Identity=49.3403693931398, Blast_Score=358, Evalue=3e-99,
Organism=Homo sapiens, GI226958412, Length=377, Percent_Identity=40.8488063660477, Blast_Score=278, Evalue=6e-75,
Organism=Homo sapiens, GI187960098, Length=382, Percent_Identity=39.5287958115183, Blast_Score=262, Evalue=3e-70,
Organism=Homo sapiens, GI4557231, Length=382, Percent_Identity=39.5287958115183, Blast_Score=262, Evalue=5e-70,
Organism=Homo sapiens, GI226958414, Length=338, Percent_Identity=41.7159763313609, Blast_Score=255, Evalue=4e-68,
Organism=Homo sapiens, GI4501859, Length=374, Percent_Identity=37.7005347593583, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=34.7480106100796, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI21361497, Length=369, Percent_Identity=37.940379403794, Blast_Score=224, Evalue=8e-59,
Organism=Homo sapiens, GI4501857, Length=379, Percent_Identity=34.8284960422164, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI4557235, Length=374, Percent_Identity=37.4331550802139, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI76496475, Length=374, Percent_Identity=37.4331550802139, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI4503943, Length=377, Percent_Identity=30.2387267904509, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI7669494, Length=351, Percent_Identity=31.0541310541311, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI211971008, Length=334, Percent_Identity=32.3353293413174, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI48976061, Length=334, Percent_Identity=32.3353293413174, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI38505218, Length=401, Percent_Identity=27.930174563591, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI218563752, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081958, Length=382, Percent_Identity=34.0314136125654, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1786223, Length=381, Percent_Identity=29.1338582677165, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI87081702, Length=347, Percent_Identity=24.7838616714697, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082384, Length=285, Percent_Identity=24.5614035087719, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=382, Percent_Identity=41.0994764397906, Blast_Score=280, Evalue=8e-76,
Organism=Caenorhabditis elegans, GI17570075, Length=383, Percent_Identity=42.0365535248042, Blast_Score=279, Evalue=1e-75,
Organism=Caenorhabditis elegans, GI17534899, Length=384, Percent_Identity=41.1458333333333, Blast_Score=275, Evalue=3e-74,
Organism=Caenorhabditis elegans, GI17538396, Length=384, Percent_Identity=38.5416666666667, Blast_Score=263, Evalue=9e-71,
Organism=Caenorhabditis elegans, GI17508101, Length=373, Percent_Identity=37.5335120643432, Blast_Score=246, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI17506239, Length=373, Percent_Identity=36.7292225201072, Blast_Score=237, Evalue=8e-63,
Organism=Caenorhabditis elegans, GI17533517, Length=376, Percent_Identity=35.1063829787234, Blast_Score=219, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI71990804, Length=279, Percent_Identity=41.9354838709677, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71985184, Length=373, Percent_Identity=34.0482573726542, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17551932, Length=360, Percent_Identity=31.6666666666667, Blast_Score=197, Evalue=7e-51,
Organism=Caenorhabditis elegans, GI17505929, Length=356, Percent_Identity=31.4606741573034, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17534353, Length=377, Percent_Identity=30.2387267904509, Blast_Score=193, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI71985192, Length=320, Percent_Identity=31.5625, Blast_Score=147, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI71982178, Length=276, Percent_Identity=32.9710144927536, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI32563615, Length=232, Percent_Identity=34.9137931034483, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17531909, Length=239, Percent_Identity=33.8912133891213, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562446, Length=337, Percent_Identity=29.080118694362, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17531913, Length=176, Percent_Identity=35.2272727272727, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21356377, Length=376, Percent_Identity=47.6063829787234, Blast_Score=353, Evalue=1e-97,
Organism=Drosophila melanogaster, GI24646207, Length=381, Percent_Identity=43.8320209973753, Blast_Score=313, Evalue=1e-85,
Organism=Drosophila melanogaster, GI21355753, Length=381, Percent_Identity=41.4698162729659, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI24660351, Length=380, Percent_Identity=40.5263157894737, Blast_Score=270, Evalue=1e-72,
Organism=Drosophila melanogaster, GI24666513, Length=376, Percent_Identity=39.8936170212766, Blast_Score=258, Evalue=5e-69,
Organism=Drosophila melanogaster, GI281363737, Length=374, Percent_Identity=35.8288770053476, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI19920834, Length=379, Percent_Identity=32.1899736147757, Blast_Score=184, Evalue=9e-47,
Organism=Drosophila melanogaster, GI221473076, Length=352, Percent_Identity=24.1477272727273, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550141, Length=352, Percent_Identity=24.1477272727273, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40800; Mature: 40800

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFQLTKEQQMVREMVRDFAKNEIAPKAHEVDQSAVFPIDTFKKIGELGLLGIPFPEEYG
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHCCCEECCCCCHHHC
GAGGDTISYAAAVEEIGKACGSTGLSYAAAVSLGASPLYYFGTEQQKQEHLIPLASGKAL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCEECCCCCC
GSFGLTEPNAGSDAGGTQTKAEKKGGDYVINGEKCWITNANYARTVIVTAVTGKNSAGKP
CCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEECCCCEEEEEEEEEECCCCCCCC
IISALIVPTDTPGFTITNPYDKMGVRGSDTAELVLEDVRVPADNLLGDPEKGFKQFLYTL
EEEEEEEECCCCCCEECCCHHHCCCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC
DGGRISIAALAVGIAQGALEASLSYAKERKQFGSPISSFQAIQFKLADMAMEIDLARQMV
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKAAWLKDQNLPFTKEAAFAKLYASEMAVRTCLQAIQIHGGSGYMKECGVERMLRDAKLM
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EIGEGTSEIQRMVIARQLLK
HHCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNFQLTKEQQMVREMVRDFAKNEIAPKAHEVDQSAVFPIDTFKKIGELGLLGIPFPEEYG
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHCCCEECCCCCHHHC
GAGGDTISYAAAVEEIGKACGSTGLSYAAAVSLGASPLYYFGTEQQKQEHLIPLASGKAL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCEECCCCCC
GSFGLTEPNAGSDAGGTQTKAEKKGGDYVINGEKCWITNANYARTVIVTAVTGKNSAGKP
CCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEECCCCEEEEEEEEEECCCCCCCC
IISALIVPTDTPGFTITNPYDKMGVRGSDTAELVLEDVRVPADNLLGDPEKGFKQFLYTL
EEEEEEEECCCCCCEECCCHHHCCCCCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC
DGGRISIAALAVGIAQGALEASLSYAKERKQFGSPISSFQAIQFKLADMAMEIDLARQMV
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKAAWLKDQNLPFTKEAAFAKLYASEMAVRTCLQAIQIHGGSGYMKECGVERMLRDAKLM
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EIGEGTSEIQRMVIARQLLK
HHCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]