Click here to switch to the map view.

The map label for this gene is ykqC [H]

Identifier: 154685860

GI number: 154685860

Start: 1386599

End: 1388266

Strand: Reverse

Name: ykqC [H]

Synonym: RBAM_014270

Alternate gene names: 154685860

Gene position: 1388266-1386599 (Counterclockwise)

Preceding gene: 154685861

Following gene: 154685854

Centisome position: 35.43

GC content: 46.52

Gene sequence:

>1668_bases
ATGAAATTTGTAAAAAATGACCAGACTGCCGTTTTCGCCCTCGGCGGATTGGGCGAGATCGGAAAAAATACGTACGGGGT
GCAGTTTCAGGATGAAATTGTACTGATTGATGCGGGAATCAAGTTCCCGGAAGATGAACTTCTCGGCATTGATTACGTAA
TCCCCGATTACACGTATTTAGTAAAAAATGAAGATAAAATTAAAGGTCTGTTTATCACCCACGGTCACGAAGACCATATC
GGCGGTATTCCGTACCTGCTCAGACAAGTAAATATTCCCGTTTACGGCGGTAAACTCGCGATCGGCTTACTTCGGAATAA
ACTTGAAGAGCACGGGCTGTTAAGACAGACCAAATTAAACATCATCGGTGAAGACGACATCGTGAAGTTCCGCAAGACAT
CTGTATCCTTCTTCAGAACGACACACAGCATTCCGGATTCATACGGAATCGTCGTCAAAACACCGCCGGGCAATATCGTA
CATACCGGGGACTTTAAGTTCGATTTCACACCGGTAGGCGAACCGGCAAACTTGACAAAGATGGCTGAAATCGGGAAAGA
AGGCGTTCTGTGCCTGCTTTCTGACAGTACAAACAGTGAGGTTCCTGATTTCACCATGTCAGAACGCCGCGTAGGCGAAA
GCATTCACGATATTTTCCGAAAAGTGGACGGCAGAATTATATTTGCGACATTCGCTTCGAATATACACCGTCTTCAGCAG
GTGATTGAAGCAGCCGTTTTAAACGGCAGAAAAGTTGCCGTATTCGGACGCAGTATGGAATCGGCTATTGAAATCGGACA
AAATCTCGGTTACATTACTTGTCCTAAAAATACGTTTATTGAGCATAACGAAATCAATCGTTTGCCTGCCAATAAAGTAA
CAATTTTATGTACGGGAAGCCAAGGTGAACCGATGGCGGCGTTATCACGCATCGCTAACGGGACGCACCGGCAGATTTCC
ATTAATCCCGGAGATACGGTCGTCTTTTCTTCCTCTCCGATTCCCGGAAACACAATCAGCGTAAGCCGCACCATCAACCA
GCTGTACCGTGCGGGCGCAGAAGTCATTCACGGTTCATTGAATGACATTCATACATCCGGACACGGCGGACAGGAAGAGC
AGAAATTAATGCTCCGCCTGATCAAACCGAAGTTCTTTATGCCGATTCACGGTGAGTACAGAATGCAGAAAATGCACGTC
AAACTCGCGACTGATTGCGGCATACCCGAAGAAAACTGCTTTATCATGGATAATGGCGAAGTGCTGGCCCTCAAAGGCGA
AGAAGCCGCTGTGGCAGGCAAAATTCCGTCCGGCTCCGTTTACATTGACGGAAGCGGAATCGGTGATATCGGCAATATCG
TGCTCCGCGACCGCCGCATTCTTTCAGAAGAAGGCCTTGTTATCGTTGTTGTCAGCATCAATATGGATGACTTTAGGGTT
TCGGCGGGGCCTGATTTAATCTCAAGAGGTTTTGTATACATGAGAGAATCCGGTGATTTGATCAATGACGCGCAGCAGCT
CATTTCAAACCATCTGGAGAAAGTAATGGATCGGAAAACAACGCAGTGGTCCGAAATTAAAAACGAAATTACCGATACAC
TTGCTCCGTTCCTATACGAAAAAACAAAACGCCGCCCGATGATCCTTCCGATCATTATGGAGGTCTAA

Upstream 100 bases:

>100_bases
ATCAGAAATACAACATTGAATTTGTTCAGCCTGTGGACGGTGCTTTTTTAGAATATGAGAAGCAGAGCGAAAATTTTAAA
GTATTGGAGTTATGAGCGGA

Downstream 100 bases:

>100_bases
AAAAACTGCACTCGTAATGAGTGCAGTTTTTTTATTGCAGCGGAATATGCTGAAAGGCTTTGACATCAAACAGACCGGCT
GCTGTCATTTTAATATCCGG

Product: YkqC

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHI
GGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRLPANKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFRV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV

Sequences:

>Translated_555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHI
GGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRLPANKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFRV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV
>Mature_555_residues
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHI
GGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIV
HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRLPANKVTILCTGSQGEPMAALSRIANGTHRQIS
INPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHV
KLATDCGIPEENCFIMDNGEVLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFRV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61445; Mature: 61445

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
CCCCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHEEEEEECCCEEEE
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
EECCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEE
IIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
EECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRLPANKVTILCTGS
HHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEHHHHHHHHHHCCHHHCCCCC
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
HHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEECCC
VLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFRV
EEEEECCCEEEECCCCCCCEEECCCCCCCHHHHEECCCHHHCCCCEEEEEEEECCCCEEE
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYE
CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
KTKRRPMILPIIMEV
HHCCCCEEEEEEECC
>Mature Secondary Structure
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
CCCCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHEEEEEECCCEEEE
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
EECCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCEEEEEEE
IIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
EECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCEEEEECCCCCCCHHH
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRLPANKVTILCTGS
HHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECC
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEHHHHHHHHHHCCHHHCCCCC
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
HHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEECCC
VLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFRV
EEEEECCCEEEECCCCCCCEEECCCCCCCHHHHEECCCHHHCCCCEEEEEEEECCCCEEE
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYE
CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
KTKRRPMILPIIMEV
HHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]