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The map label for this gene is ykuT [H]

Identifier: 154685831

GI number: 154685831

Start: 1358890

End: 1359696

Strand: Reverse

Name: ykuT [H]

Synonym: RBAM_013980

Alternate gene names: 154685831

Gene position: 1359696-1358890 (Counterclockwise)

Preceding gene: 154685834

Following gene: 154685817

Centisome position: 34.7

GC content: 48.95

Gene sequence:

>807_bases
ATGATTGATTTAAAACACTTTGACTGGGCCGGGCTTCTCACATCTGCCGGGATTTTCATCATAAAGCTGGCTCTCATTAT
TTTAGCGTACTTTATTTTCCGGGCGGCAGGAAAAAAGCTGATCAAGCATCTGTTTCAGAAATTCGAGCAACAAAACAACC
TCTCCACAGGCCGCGCTTATACTTTGCGAAGCCTCGCGCTTAATGTATATGGATACATCCTGATTTTCGTTTTTATCGTA
ATGATTTTGGATTTATTTCACTACAATCCGAGCGCTCTCATTGCCGGCGCCGGGGTGGTCGGTCTCGCAGTCGGCTTCGG
GGCTCAGGGGCTTGTCAGTGACATCGTCACCGGATTTTTTATCCTTTTGGAAAAACAGATCGACGTCGGCGATTATATTA
CGGTTGCCGGCTACAGCGGCATTGTCGAGCAGGTCGGTCTCCGTACGACGCAAATCCGGAGCTTTGACGGCACGCTTCAC
TATCTTCCCAACCGGGGCATTACGAATGTGAGCAACCATTCCCGCGGAACGATGCAGGCGCTTGTCGATATTAAAGTGCC
GCTTGAAAAAAATCTTGATGAAACCATTCAAATCCTGCAAACCGCGTGTGACAAAGCAGCCGCTGCGCTCCCGCAGATTA
AGGAAGGGCCGGACGTCATCGGGGTTCAGGATTTAAGCACGTCAGAAATGGTGATCAGAATCATTGCCAAAACAGAAAAT
ATGGAGCAATGGCGGGTTGAACGCGTACTGCGGAGAGAAATAAAAATCGCGCTCGACCGTTTTAAAAACGCCGCTTCCGC
CGAATAG

Upstream 100 bases:

>100_bases
AATGAAATAACTGGTTTCTATTAAAAGGTTTATCTTATTTTAAAAACGGGTATATGACTTTTAGCTTTTTCCGCAAAAGA
CTTGAAAGGAAGACATCACT

Downstream 100 bases:

>100_bases
AAAAACCGAAGCGTAAGCTTCGGTTTTTTCTTTTTAATGAAATTTTTTTTCCACTTCGCTGCAGATTTCGTCGGCGGTCA
TTCCGGAAGCCGTAATGACG

Product: YkuT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MIDLKHFDWAGLLTSAGIFIIKLALIILAYFIFRAAGKKLIKHLFQKFEQQNNLSTGRAYTLRSLALNVYGYILIFVFIV
MILDLFHYNPSALIAGAGVVGLAVGFGAQGLVSDIVTGFFILLEKQIDVGDYITVAGYSGIVEQVGLRTTQIRSFDGTLH
YLPNRGITNVSNHSRGTMQALVDIKVPLEKNLDETIQILQTACDKAAAALPQIKEGPDVIGVQDLSTSEMVIRIIAKTEN
MEQWRVERVLRREIKIALDRFKNAASAE

Sequences:

>Translated_268_residues
MIDLKHFDWAGLLTSAGIFIIKLALIILAYFIFRAAGKKLIKHLFQKFEQQNNLSTGRAYTLRSLALNVYGYILIFVFIV
MILDLFHYNPSALIAGAGVVGLAVGFGAQGLVSDIVTGFFILLEKQIDVGDYITVAGYSGIVEQVGLRTTQIRSFDGTLH
YLPNRGITNVSNHSRGTMQALVDIKVPLEKNLDETIQILQTACDKAAAALPQIKEGPDVIGVQDLSTSEMVIRIIAKTEN
MEQWRVERVLRREIKIALDRFKNAASAE
>Mature_268_residues
MIDLKHFDWAGLLTSAGIFIIKLALIILAYFIFRAAGKKLIKHLFQKFEQQNNLSTGRAYTLRSLALNVYGYILIFVFIV
MILDLFHYNPSALIAGAGVVGLAVGFGAQGLVSDIVTGFFILLEKQIDVGDYITVAGYSGIVEQVGLRTTQIRSFDGTLH
YLPNRGITNVSNHSRGTMQALVDIKVPLEKNLDETIQILQTACDKAAAALPQIKEGPDVIGVQDLSTSEMVIRIIAKTEN
MEQWRVERVLRREIKIALDRFKNAASAE

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=265, Percent_Identity=29.0566037735849, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI2367355, Length=195, Percent_Identity=23.5897435897436, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787591, Length=137, Percent_Identity=27.007299270073, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 29685; Mature: 29685

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLKHFDWAGLLTSAGIFIIKLALIILAYFIFRAAGKKLIKHLFQKFEQQNNLSTGRAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
TLRSLALNVYGYILIFVFIVMILDLFHYNPSALIAGAGVVGLAVGFGAQGLVSDIVTGFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
ILLEKQIDVGDYITVAGYSGIVEQVGLRTTQIRSFDGTLHYLPNRGITNVSNHSRGTMQA
HHHHHCCCCCCEEEECCHHHHHHHHCCCHHHEECCCCEEEECCCCCCCCCCCCCCHHHHH
LVDIKVPLEKNLDETIQILQTACDKAAAALPQIKEGPDVIGVQDLSTSEMVIRIIAKTEN
HHHEECCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
MEQWRVERVLRREIKIALDRFKNAASAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIDLKHFDWAGLLTSAGIFIIKLALIILAYFIFRAAGKKLIKHLFQKFEQQNNLSTGRAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
TLRSLALNVYGYILIFVFIVMILDLFHYNPSALIAGAGVVGLAVGFGAQGLVSDIVTGFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
ILLEKQIDVGDYITVAGYSGIVEQVGLRTTQIRSFDGTLHYLPNRGITNVSNHSRGTMQA
HHHHHCCCCCCEEEECCHHHHHHHHCCCHHHEECCCCEEEECCCCCCCCCCCCCCHHHHH
LVDIKVPLEKNLDETIQILQTACDKAAAALPQIKEGPDVIGVQDLSTSEMVIRIIAKTEN
HHHEECCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
MEQWRVERVLRREIKIALDRFKNAASAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]