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The map label for this gene is ykoC [H]

Identifier: 154685740

GI number: 154685740

Start: 1270027

End: 1270788

Strand: Reverse

Name: ykoC [H]

Synonym: RBAM_013070

Alternate gene names: 154685740

Gene position: 1270788-1270027 (Counterclockwise)

Preceding gene: 154685741

Following gene: 154685738

Centisome position: 32.43

GC content: 51.71

Gene sequence:

>762_bases
ATGAACTTGCGGCTGGAGGCTGTTAATCCGTCAATAAAGGCGGCGGCTGTATTGTTATGCGTCATAATGCTGTCGTTTAT
TTATAATCCGTACACCCCTGCTTTGTTTTATATCATCATTGCGGGAGGTGTCCTCTCGGCGGGTCGTGTGCCGCTGAAAA
AATGGCTGCTGTTCACGATTCCGTTTGTCATTCTGGCCTTCGGTTCTTTATGGACAGCCGCCGTATTCGGAAACATCCCG
ACAACCGGAAGCAACCTGCTGTTTAAGCTCGGGCCGATTGCCGTCAACAGTGATAACGCGGCGCTCGGGATTTCTATCGC
GTTTCGTATTTTATGTTTTTCCGCTTTGTCGATGATGTTTCTTTTCACAACCGATCCGATTCTGTTCATGCTCAGTCTGA
TTCAGCAGTGTAAGCTGCCGCCCAAGCTTGCATACGGCGTTATCGCGGGGTTCCGGTTTCTCCCTCTTCTGAAAGATGAA
ATCCTGATCATCCGGCAGGCGCACAGAATCAGGGGCGCGGCGTCTGATTCCGGGCTGAAAGGAAAGCTCTCCGCCTTCAG
GCGCTTCACCATTCCGCTATTGGCAGGCGCAATCAGAAAGGCGGAACGCACGGCGATCGCGATGGAATCTAAAGGCTTTA
CGGGGAGCCGAAACCGCACGTTTTACAGAACTGTTACCGTGCGCCGCGCCGACTGGTGCTTTTTCCTGCTCGTGCTTCTG
TTATTCGGCGCAAGCTGGCTCATTTCATTGTTGTTTGTATAA

Upstream 100 bases:

>100_bases
CCCGACGCTTTATTTTCTGATAACACCAGGATCGCCGAGCAGGCGCATTTGGCTTTGCCGCTGCGGTATGAATGGATGAG
ACACGACAGGAGGCGGAGAA

Downstream 100 bases:

>100_bases
AAACAGGCCGCCGGAGTGATTCGGCAGCCTGTTTTGTTATGTATGTTATTGATGATAATTGAGAGCCTGAGCGAGATTGG
ACTTGATCGTAATATCTGAG

Product: YkoC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNLRLEAVNPSIKAAAVLLCVIMLSFIYNPYTPALFYIIIAGGVLSAGRVPLKKWLLFTIPFVILAFGSLWTAAVFGNIP
TTGSNLLFKLGPIAVNSDNAALGISIAFRILCFSALSMMFLFTTDPILFMLSLIQQCKLPPKLAYGVIAGFRFLPLLKDE
ILIIRQAHRIRGAASDSGLKGKLSAFRRFTIPLLAGAIRKAERTAIAMESKGFTGSRNRTFYRTVTVRRADWCFFLLVLL
LFGASWLISLLFV

Sequences:

>Translated_253_residues
MNLRLEAVNPSIKAAAVLLCVIMLSFIYNPYTPALFYIIIAGGVLSAGRVPLKKWLLFTIPFVILAFGSLWTAAVFGNIP
TTGSNLLFKLGPIAVNSDNAALGISIAFRILCFSALSMMFLFTTDPILFMLSLIQQCKLPPKLAYGVIAGFRFLPLLKDE
ILIIRQAHRIRGAASDSGLKGKLSAFRRFTIPLLAGAIRKAERTAIAMESKGFTGSRNRTFYRTVTVRRADWCFFLLVLL
LFGASWLISLLFV
>Mature_253_residues
MNLRLEAVNPSIKAAAVLLCVIMLSFIYNPYTPALFYIIIAGGVLSAGRVPLKKWLLFTIPFVILAFGSLWTAAVFGNIP
TTGSNLLFKLGPIAVNSDNAALGISIAFRILCFSALSMMFLFTTDPILFMLSLIQQCKLPPKLAYGVIAGFRFLPLLKDE
ILIIRQAHRIRGAASDSGLKGKLSAFRRFTIPLLAGAIRKAERTAIAMESKGFTGSRNRTFYRTVTVRRADWCFFLLVLL
LFGASWLISLLFV

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 27903; Mature: 27903

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRLEAVNPSIKAAAVLLCVIMLSFIYNPYTPALFYIIIAGGVLSAGRVPLKKWLLFTI
CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCCCCCHHHHHHHHHH
PFVILAFGSLWTAAVFGNIPTTGSNLLFKLGPIAVNSDNAALGISIAFRILCFSALSMMF
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHH
LFTTDPILFMLSLIQQCKLPPKLAYGVIAGFRFLPLLKDEILIIRQAHRIRGAASDSGLK
HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GKLSAFRRFTIPLLAGAIRKAERTAIAMESKGFTGSRNRTFYRTVTVRRADWCFFLLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEEEHHHHHHHHHHHH
LFGASWLISLLFV
HHHHHHHHHHHCC
>Mature Secondary Structure
MNLRLEAVNPSIKAAAVLLCVIMLSFIYNPYTPALFYIIIAGGVLSAGRVPLKKWLLFTI
CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCCCCCHHHHHHHHHH
PFVILAFGSLWTAAVFGNIPTTGSNLLFKLGPIAVNSDNAALGISIAFRILCFSALSMMF
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHH
LFTTDPILFMLSLIQQCKLPPKLAYGVIAGFRFLPLLKDEILIIRQAHRIRGAASDSGLK
HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GKLSAFRRFTIPLLAGAIRKAERTAIAMESKGFTGSRNRTFYRTVTVRRADWCFFLLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEEEHHHHHHHHHHHH
LFGASWLISLLFV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]