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The map label for this gene is yjkA [H]

Identifier: 154685665

GI number: 154685665

Start: 1202052

End: 1202813

Strand: Reverse

Name: yjkA [H]

Synonym: RBAM_012320

Alternate gene names: 154685665

Gene position: 1202813-1202052 (Counterclockwise)

Preceding gene: 154685666

Following gene: 154685659

Centisome position: 30.7

GC content: 47.77

Gene sequence:

>762_bases
ATGAATGATCTTTCTCTGTTATTGACAAGTATATTTGTCATTATTGCTTTATTCCTGTCTAAATCTTTTAAAGCCGGGGT
CGAAAAGGATATGATCGTCGCAACCGTCAGGGCCGTCATTCAGCTTCTCATCATCGGCTATGTGCTGTCATTGATTTTTC
GCGGTGATCACCCGATATTTATCATATTAATGGTGCTTCTCATGCTCACGGCCGCTTCGCACAATGTCGCCAAACGGAAA
AAAATGCGGATCGGCTCATTTTGGCGCGTTTTTCTGACACTGGCGATCGCGGAAACCGTGACGCAGGGACTTTTACTGAC
CCTTCACATCATTCCGTTCACTTCAAGATATGTCATTTCGATAAGCGGCATGGTCATCGGAAACTCCATGGTGCTCTCAA
GCCTGTTTTTAAGCAGGCTCAGTTCGGAAGCAGACCTGCGGAAAGAAGAAATCCAGCTGATTCTCTCTCTCGGAGGAACG
CCTAAGCAGGCCGTCCGGCAGATATTGACGTCCAGTATGAAGCTCAGTATGATCCCGACGCTTGAAAGCCAGAAAACATT
GGGTCTCGTTCAGCTTCCCGGCATGATGACGGGGCAGATTTTAGCGGGGGCTGATCCGATACAGGCGGTGCGCTTTCAGC
TGCTGATCGTTTTTACAACGATGGCCTCCGCTCTTCTTACATGTATCATACTCAGCGCCTTGACATATCCTTCCCTTTTC
ACGGAACACTGGCAATTAAAAAAATTCAGCAGGGAAGCGTAG

Upstream 100 bases:

>100_bases
GCTGAGGGTCGGCTTTTAGAGACCGCGGAAACGAAAACGTTCTTTAAGGAACCGAAACACGAAAAGGCCCGGGCGCTTTT
ACAAGGGAGCGGGTGCTGAT

Downstream 100 bases:

>100_bases
GCTTTTTTCCCTGCTGAATGATGGTTTATGACAAGGTCAGAGATTCATAGTAACGGGATAATTCAATAATCATCGCTCCC
ATCCGCTCAATGTCCGGAGC

Product: YjkA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLSLIFRGDHPIFIILMVLLMLTAASHNVAKRK
KMRIGSFWRVFLTLAIAETVTQGLLLTLHIIPFTSRYVISISGMVIGNSMVLSSLFLSRLSSEADLRKEEIQLILSLGGT
PKQAVRQILTSSMKLSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLF
TEHWQLKKFSREA

Sequences:

>Translated_253_residues
MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLSLIFRGDHPIFIILMVLLMLTAASHNVAKRK
KMRIGSFWRVFLTLAIAETVTQGLLLTLHIIPFTSRYVISISGMVIGNSMVLSSLFLSRLSSEADLRKEEIQLILSLGGT
PKQAVRQILTSSMKLSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLF
TEHWQLKKFSREA
>Mature_253_residues
MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLSLIFRGDHPIFIILMVLLMLTAASHNVAKRK
KMRIGSFWRVFLTLAIAETVTQGLLLTLHIIPFTSRYVISISGMVIGNSMVLSSLFLSRLSSEADLRKEEIQLILSLGGT
PKQAVRQILTSSMKLSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLF
TEHWQLKKFSREA

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=242, Percent_Identity=38.4297520661157, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27940; Mature: 27940

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLSLIFRGDHPIF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IILMVLLMLTAASHNVAKRKKMRIGSFWRVFLTLAIAETVTQGLLLTLHIIPFTSRYVIS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
ISGMVIGNSMVLSSLFLSRLSSEADLRKEEIQLILSLGGTPKQAVRQILTSSMKLSMIPT
EECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCC
LESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLF
CCCCCCCCCEECCCCHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEHWQLKKFSREA
HHHHHHHHHCCCC
>Mature Secondary Structure
MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLSLIFRGDHPIF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IILMVLLMLTAASHNVAKRKKMRIGSFWRVFLTLAIAETVTQGLLLTLHIIPFTSRYVIS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
ISGMVIGNSMVLSSLFLSRLSSEADLRKEEIQLILSLGGTPKQAVRQILTSSMKLSMIPT
EECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCC
LESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLF
CCCCCCCCCEECCCCHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEHWQLKKFSREA
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]