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The map label for this gene is yjcG

Identifier: 154685625

GI number: 154685625

Start: 1160073

End: 1160588

Strand: Reverse

Name: yjcG

Synonym: RBAM_011910

Alternate gene names: NA

Gene position: 1160588-1160073 (Counterclockwise)

Preceding gene: 154685626

Following gene: 154685624

Centisome position: 29.62

GC content: 46.51

Gene sequence:

>516_bases
ATGAAATACGGTATTGTTTTATTTCCATCAAAAAAATTACAGGATCTCGCAAATTCGTACCGGAAACGCTACGACCCGAG
CTACGCGCTCATTCCTCCGCACCTGACGGTAAGAGATCCGTTTGAAGCGACAGAACAGGAAATCGAGCAGGTCGTATCAC
AGCTGAGACAGACGGCGAAAGAGTCGCATCCGCTCGTTCTGAAAATCACAAAATACAGCTCGTTTTCTCCTGTGAATAAT
GTGATATATATGAAAGCAGAGCCGACGGAAGAATTAAAATCTCTGAGTGAGAAATGCTACTCAGGAGCATTATCCGGCGA
GCCGGAATACAGCTTCGTTCCGCATGTCACGGTCGGCCAGAAGCTGTCGTCAGATGAACATTCCGACGTACTCGGACAGC
TGAAAATGCAGGACATTTCCCACGAAGAAGTCATCGACCGTTTTCACTTGCTCTATCAGCTGGATAACGGCTCATGGACT
GTGTACGAAACATTTTTATTAGGCGGAGGAGAATAA

Upstream 100 bases:

>100_bases
GAAACCTTCGACGGGGATCATAAATGGACCTACTGGCAGCCGCTCATCACGCCGGCGCTGAAAAAAATGCTGTAACCATT
CATTTAAGGAGGGAACTTTC

Downstream 100 bases:

>100_bases
CTGCTTGGAATCCATCATCGCAAAAACTGAAAAACAGCTAAACGACGCTTTTTTCGTCAGAAAAGAGGTCTTTGTTAAAG
AACAGCACGTTCCGGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYALIPPHLTVRDPFEATEQEIEQVVSQLRQTAKESHPLVLKITKYSSFSPVNN
VIYMKAEPTEELKSLSEKCYSGALSGEPEYSFVPHVTVGQKLSSDEHSDVLGQLKMQDISHEEVIDRFHLLYQLDNGSWT
VYETFLLGGGE

Sequences:

>Translated_171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYALIPPHLTVRDPFEATEQEIEQVVSQLRQTAKESHPLVLKITKYSSFSPVNN
VIYMKAEPTEELKSLSEKCYSGALSGEPEYSFVPHVTVGQKLSSDEHSDVLGQLKMQDISHEEVIDRFHLLYQLDNGSWT
VYETFLLGGGE
>Mature_171_residues
MKYGIVLFPSKKLQDLANSYRKRYDPSYALIPPHLTVRDPFEATEQEIEQVVSQLRQTAKESHPLVLKITKYSSFSPVNN
VIYMKAEPTEELKSLSEKCYSGALSGEPEYSFVPHVTVGQKLSSDEHSDVLGQLKMQDISHEEVIDRFHLLYQLDNGSWT
VYETFLLGGGE

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1191_BACA2 (A7Z3H9)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001420786.1
- ProteinModelPortal:   A7Z3H9
- SMR:   A7Z3H9
- STRING:   A7Z3H9
- EnsemblBacteria:   EBBACT00000007068
- GeneID:   5463229
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_011910
- eggNOG:   COG1514
- GeneTree:   EBGT00050000002956
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   BAMY326423:RBAM_011910-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 19472; Mature: 19472

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIVLFPSKKLQDLANSYRKRYDPSYALIPPHLTVRDPFEATEQEIEQVVSQLRQTAK
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ESHPLVLKITKYSSFSPVNNVIYMKAEPTEELKSLSEKCYSGALSGEPEYSFVPHVTVGQ
HCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KLSSDEHSDVLGQLKMQDISHEEVIDRFHLLYQLDNGSWTVYETFLLGGGE
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC
>Mature Secondary Structure
MKYGIVLFPSKKLQDLANSYRKRYDPSYALIPPHLTVRDPFEATEQEIEQVVSQLRQTAK
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ESHPLVLKITKYSSFSPVNNVIYMKAEPTEELKSLSEKCYSGALSGEPEYSFVPHVTVGQ
HCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KLSSDEHSDVLGQLKMQDISHEEVIDRFHLLYQLDNGSWTVYETFLLGGGE
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA