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The map label for this gene is yjcD [H]

Identifier: 154685618

GI number: 154685618

Start: 1154273

End: 1156558

Strand: Reverse

Name: yjcD [H]

Synonym: RBAM_011840

Alternate gene names: 154685618

Gene position: 1156558-1154273 (Counterclockwise)

Preceding gene: 154685621

Following gene: 154685613

Centisome position: 29.51

GC content: 47.73

Gene sequence:

>2286_bases
TTGAAATGCGCCCGACTGAATAACCGAACGATACATTTACATACATATTCTAGAGAACATTACCAATTCCTTTTTGAAGA
AGCTCAGAAAGGAAATATTTTTTGCGCACATTGTGAGCAGCCCGTCTTGATGCGGCTTTCGATTTTAGAGCAGCCGGCAT
TTTATCACCGGCAAAAGGGAGACTTCACCGCCTGTGAAAAAGCATGCGCGGCCGAGGAACCACAAGCGGAGAAAGAAAAA
GAAGAGTATAAGGAAGCCGGCATGTTCCGCCTGCCGAAAGGAAAAGCGATTTCAGAGAATCCGAAACCGATCGTCTCAGA
ATGGAAAAGCCCGAAAAAAGTGCCTGCGGCCGAACCGTTTTCACCAACATCCGAGGCGGCTGATACATCTTTGTTCCCCG
GCATCGGCCTGAACCGTGAACAGATGAAGGCAGTTACTGAAACGGACGGGCCTTTATTAGTGCTTGCCGGAGCGGGAAGC
GGAAAAACAAGGGTGCTGACAGCACGCGCCGCCCATATGATTGAACACCTCGGCATTTCACCTGAGAATATGCTGCTTGT
GACCTTTACGACAAAAGCCGTCGCCGAAATGAAAGAGCGGATGGCAAATGAGTACGGTCTGGCAGCCGGAAAAGTCTCCC
GTCTCGTGACCGGAACATTCCACAGTTTTTTCTATAAAATACTCTATCATTATGATTCTTCAAAATGGAACGGCAGCCAG
CTTTTAAAAATGGAGTGGCAAAAAGAGCAATATGTGAAAAAGGCGCTCTATGAAGAAAATTTGGATGAAAAAGAGTTTCC
CGTCGACCAGGCGCTTCAGCTTATCGGCTGCTGGAAAAACACGTATCTCCCCCATGAGACCATTCCGCTTGCGGACGACT
GGGAGAAAAAAGTGTACAGGCTTTACGAACATTACGAACGGCAGAAGCGGGAAAAACGGCAATTTGATTTTGATGACATG
GCCCAAGGCTGTTATGAACTGTTTCAAAGCCGGCCTGATATTCTCGCGCAGTACCAAAACAGATTTTCTCATATTTTGAT
TGATGAATTTCAAGATATCAATCCTGTCCAGTACAACATTATGCAAATGATCGCAAGCCCAGAGAATAACCTGTGCTGCG
TGGGTGATGACGACCAATCCATTTATGCGTTCCGAGGCAGCAGCCCGTCTTTCATTTTAGATTTTCAAAAGGATTATCCG
GCAGCAAAGACCATTTACTTAACGGCAAATTACCGATCGCCGCATCCGATCGTCTCAAGCGCTCATGCCGTCGTAAAGAA
AAATAAAAAACGGTATGAAAAAACACTTTCTGCCGTCAAAGACGGCGTTCACAATCCCGTGATGTTTTATCCTTACGATG
AAGAAGAAGAAGCGACCATGATCGTTTCGGATATGAAAGAGAAGATTCAAAACGGGGCGAGTCCTGACGATTTTGCCGTA
CTTTACCGGACAAACAGCGCCGGACGGGCCATTTATGAAAGACTGCATCAATCATCGATTCCTTACCATGCCGACAGGGG
CGTGCAGACGTTCTACAGCCGCAGAATCGTACGCCAGATCCTCGCCTACTTATATGCGAGTCAGAATGAAGATGATCCGG
ATGCGGTGAAAGACCTGCTGCCCGCCTTATTTTTAAAGCAATCCGCCCTGCAAACGTTAAAGGCGCTGTCAATCACGGAA
GATTGCACGATGATCAAGGCACTGACGAAACTGCCTGACCTGAAGCCTTTTCAAATAGGGAAGATCAAGCAGATCGTTCC
GTTTTTCGCAAGCATCCGGACAATGAAGCCGGTTGAAGCCATCACCTTTGCAGAAAGCAAAATGGGTTTTTCCGAGTATT
TAAAAAAACGGGGCAATGAGGGAAACAAACTGGAAAAAGGCTCTGATGATCTCAGGGATGTCAAAGTGGCCGCCAAAAAA
TTCAAAACCATTCCCGATTTTCTTGCGCATGTCGATCATATGCGCGCCGCTGAGAATCTGAAAACCGATGAAAACGGCGT
CGAACTTCTGACCATTCACCGCTCTAAAGGTCTTGAATTCAATACGGTCTATATTTTAGGCGCGGCTGACGGCTCGATCC
CCCATGACTTCGCACTTGAGACGGCGAGACAGGGCGATCCCGCTCCGCTCGAAGAAGAAAGACGGCTTCTGTATGTCGCA
ATGACAAGGGCCATGCAGCATTTATATGTATCTTGTCCCGCGTACAGGCGGGGAAAAACAGCGCGCAGCTCAAGATTTCT
CGAGCCCCTTCTTCGGACGGACAGACGGAGCGCACTCAGGATATAA

Upstream 100 bases:

>100_bases
TTTCATTTCCCTTAATCTTACTTTTTGAAACGCTGTTCTTTTGTTATGATATTCTTTGTCTATCAAATGGATGAACACCT
TTTAATGGGAGGACCCCTTT

Downstream 100 bases:

>100_bases
AGAACCCGGCAGATCACTGCCGGGTTCTTCTCACATAAAAAGGCCTTTTTAGCAAGGCCGGCTGACGCCTATTTATTGTT
CAGCATTTTAGAAATGGTGC

Product: YjcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 761; Mature: 761

Protein sequence:

>761_residues
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKGDFTACEKACAAEEPQAEKEK
EEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPFSPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGS
GKTRVLTARAAHMIEHLGISPENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLYEHYERQKREKRQFDFDDM
AQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNIMQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYP
AAKTIYLTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLLPALFLKQSALQTLKALSITE
DCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKK
FKTIPDFLAHVDHMRAAENLKTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI

Sequences:

>Translated_761_residues
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKGDFTACEKACAAEEPQAEKEK
EEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPFSPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGS
GKTRVLTARAAHMIEHLGISPENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLYEHYERQKREKRQFDFDDM
AQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNIMQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYP
AAKTIYLTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLLPALFLKQSALQTLKALSITE
DCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKK
FKTIPDFLAHVDHMRAAENLKTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
>Mature_761_residues
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKGDFTACEKACAAEEPQAEKEK
EEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPFSPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGS
GKTRVLTARAAHMIEHLGISPENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLYEHYERQKREKRQFDFDDM
AQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNIMQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYP
AAKTIYLTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLLPALFLKQSALQTLKALSITE
DCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKK
FKTIPDFLAHVDHMRAAENLKTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=645, Percent_Identity=32.8682170542636, Blast_Score=297, Evalue=2e-81,
Organism=Escherichia coli, GI48994965, Length=649, Percent_Identity=28.9676425269646, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1789183, Length=516, Percent_Identity=23.8372093023256, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6322369, Length=467, Percent_Identity=29.9785867237687, Blast_Score=151, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6324477, Length=458, Percent_Identity=24.4541484716157, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 87053; Mature: 87053

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKG
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHCCCC
DFTACEKACAAEEPQAEKEKEEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPF
CHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
CCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCEEEEHHHHHHHHHHCCCC
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
CCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
HHHHHCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHH
AHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
EEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
HHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKG
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHCCCC
DFTACEKACAAEEPQAEKEKEEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPF
CHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
CCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCEEEEHHHHHHHHHHCCCC
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
CCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
HHHHHCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHH
AHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
EEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
HHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]