| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is yheD [H]
Identifier: 154685434
GI number: 154685434
Start: 977086
End: 978444
Strand: Reverse
Name: yheD [H]
Synonym: RBAM_010000
Alternate gene names: 154685434
Gene position: 978444-977086 (Counterclockwise)
Preceding gene: 154685435
Following gene: 154685433
Centisome position: 24.97
GC content: 49.15
Gene sequence:
>1359_bases GTGAATCATAAAGGGATGATTGTCGGCATCGATAAAAAAAGCAAAAATACGCTGTTTCTCCCCTCCTCCATGAAACGGGA AGGGCTTTTATCCGCTGCCTTCGGGACCAAGGTTGTCAAATGCCGTGTAGCCTTTTCTCAATCACTTGAAAAAAGCGCGC TCCTTTCTGAAGATTTGTTTGAGGAGCTGTTGATACCGCATAAAAGCCGGGCTGACTTTCTCATACACGGCCAGACGGTG CACATCGGACCGCTGATCGGCGTTTTCACAGCCGGGTTCACATCATCGCCGTCCCGCCCGTTAAGAGACCGTACAGCCTT CTTTTCCAAGATGCTCTCTCTTCATGAACAGGCGAACGGATATTGTTTCGTTTTCGGGGCCCATCAGATCAACTGGGAAG AAGGCACCGTCCAAGCGCTGATTTATAAAGAAAACAGCTGGAAACGGACGGCCGTCCCGCTTCCGAATGTCGTATATGAC AGGCTCCCGAGCCGAAAAACGGAAGAAGTTCCGCTTTTACAGCAGACAAAACAAAGGCTGATGAATGACTATCAGATTCC ATGGTTTAATCCGCAATTCTTTAATAAATGGGACATTCATAAGCTTCTGGAAAAAAACAGTCTCACCGCTTCACTTCTGC CAAAATCTGTCCTGCACCCGAATGCAGAAGCGTTAGAAACGTTATGCAGCACGTTTGACACCGTCTATATCAAACCTGCA GACGGCGCACTCGGAACGGGGATTTACAAGGTGGAAAAAACAGATGCCGGCTTATCTGTCAAACACACGAATGAGGAAAA AACGGTGGTGACGGCAGAGTATTCAGATGCGGCATCCTTCATGACATCATTTAAAGAAAACAATGACCCGTCCGCATTTT TAATTCAGCAAGGCATTGACCTGATCCGGCTGGATGGGCGCCCCGTCGATTTCAGGGTGCACACGAATAAAAACGCCGAG GGGAAATGGACAGTGACGGCCATTGCGGCAAAAATTTCCGGTGAAAACAGCATCACGACGCATCTGGCAACCGGCGGAGA AGTCAGGACGTTAGCTGAATTATACGGCGATCCGCGCGAGAGAGTCGGCATGATGCGGAAACTTTCAAAAGCCGCCTTGG CGGTCAGCCGCGTGTTAAATGAGCACATTGAAGGTTTTATCGGCGAAATCGGTTTTGACCTCGGCGTCGATCATTCAGGG AAAGTTTGGATGTTTGAAGCCAATTCCCGCCCCGGGCGCAGCATTTTTTCCCATCCGAAGCTGAAATCGGTCGATTACCT GACAAAACGGAGAAATTTTGAATACGCGTCGTATTTATCAGAACGGTCCATCACCGCCCCGGAAAAACTTTGGCGGTGA
Upstream 100 bases:
>100_bases TTAAGCGTGGCTCCGGAGGCGAAAGAGGATTTGTATACGAGTCCGCTGAGACGCTTCCGCGAACTTCAGTCACAGGAAAG CCGGAAAGGAGTATTACCGC
Downstream 100 bases:
>100_bases GGCTGTCTTTTTTTAGGTTTACCCGGGACAGGCATTGAACGATGAGCTACAATGAACAAGATCAACATTTCCCATAAGGA GCGTGAACGTCATGATTTCG
Product: YheD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MNHKGMIVGIDKKSKNTLFLPSSMKREGLLSAAFGTKVVKCRVAFSQSLEKSALLSEDLFEELLIPHKSRADFLIHGQTV HIGPLIGVFTAGFTSSPSRPLRDRTAFFSKMLSLHEQANGYCFVFGAHQINWEEGTVQALIYKENSWKRTAVPLPNVVYD RLPSRKTEEVPLLQQTKQRLMNDYQIPWFNPQFFNKWDIHKLLEKNSLTASLLPKSVLHPNAEALETLCSTFDTVYIKPA DGALGTGIYKVEKTDAGLSVKHTNEEKTVVTAEYSDAASFMTSFKENNDPSAFLIQQGIDLIRLDGRPVDFRVHTNKNAE GKWTVTAIAAKISGENSITTHLATGGEVRTLAELYGDPRERVGMMRKLSKAALAVSRVLNEHIEGFIGEIGFDLGVDHSG KVWMFEANSRPGRSIFSHPKLKSVDYLTKRRNFEYASYLSERSITAPEKLWR
Sequences:
>Translated_452_residues MNHKGMIVGIDKKSKNTLFLPSSMKREGLLSAAFGTKVVKCRVAFSQSLEKSALLSEDLFEELLIPHKSRADFLIHGQTV HIGPLIGVFTAGFTSSPSRPLRDRTAFFSKMLSLHEQANGYCFVFGAHQINWEEGTVQALIYKENSWKRTAVPLPNVVYD RLPSRKTEEVPLLQQTKQRLMNDYQIPWFNPQFFNKWDIHKLLEKNSLTASLLPKSVLHPNAEALETLCSTFDTVYIKPA DGALGTGIYKVEKTDAGLSVKHTNEEKTVVTAEYSDAASFMTSFKENNDPSAFLIQQGIDLIRLDGRPVDFRVHTNKNAE GKWTVTAIAAKISGENSITTHLATGGEVRTLAELYGDPRERVGMMRKLSKAALAVSRVLNEHIEGFIGEIGFDLGVDHSG KVWMFEANSRPGRSIFSHPKLKSVDYLTKRRNFEYASYLSERSITAPEKLWR >Mature_452_residues MNHKGMIVGIDKKSKNTLFLPSSMKREGLLSAAFGTKVVKCRVAFSQSLEKSALLSEDLFEELLIPHKSRADFLIHGQTV HIGPLIGVFTAGFTSSPSRPLRDRTAFFSKMLSLHEQANGYCFVFGAHQINWEEGTVQALIYKENSWKRTAVPLPNVVYD RLPSRKTEEVPLLQQTKQRLMNDYQIPWFNPQFFNKWDIHKLLEKNSLTASLLPKSVLHPNAEALETLCSTFDTVYIKPA DGALGTGIYKVEKTDAGLSVKHTNEEKTVVTAEYSDAASFMTSFKENNDPSAFLIQQGIDLIRLDGRPVDFRVHTNKNAE GKWTVTAIAAKISGENSITTHLATGGEVRTLAELYGDPRERVGMMRKLSKAALAVSRVLNEHIEGFIGEIGFDLGVDHSG KVWMFEANSRPGRSIFSHPKLKSVDYLTKRRNFEYASYLSERSITAPEKLWR
Specific function: Involved in sporulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Forespore outer membrane; Peripheral membrane protein. Spore wall, spore coat. Note=Forms two rings around the forespore that are offset from its midpoint, before it eventually redistributes to form a shell around the developing spore [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yheC/yheD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013816 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50742; Mature: 50742
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHKGMIVGIDKKSKNTLFLPSSMKREGLLSAAFGTKVVKCRVAFSQSLEKSALLSEDLF CCCCCEEEEECCCCCCEEECCCCCCHHCCHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH EELLIPHKSRADFLIHGQTVHIGPLIGVFTAGFTSSPSRPLRDRTAFFSKMLSLHEQANG HHHCCCCCCCCCEEEECCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC YCFVFGAHQINWEEGTVQALIYKENSWKRTAVPLPNVVYDRLPSRKTEEVPLLQQTKQRL EEEEEECEEECCCCCCEEEEEEECCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHH MNDYQIPWFNPQFFNKWDIHKLLEKNSLTASLLPKSVLHPNAEALETLCSTFDTVYIKPA HHCCCCCCCCHHHCCCHHHHHHHHHCCCCHHHCCHHHCCCCHHHHHHHHHCCCEEEEEEC DGALGTGIYKVEKTDAGLSVKHTNEEKTVVTAEYSDAASFMTSFKENNDPSAFLIQQGID CCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEECCCCC LIRLDGRPVDFRVHTNKNAEGKWTVTAIAAKISGENSITTHLATGGEVRTLAELYGDPRE EEEECCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHCCHHH RVGMMRKLSKAALAVSRVLNEHIEGFIGEIGFDLGVDHSGKVWMFEANSRPGRSIFSHPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHCCCC LKSVDYLTKRRNFEYASYLSERSITAPEKLWR CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure MNHKGMIVGIDKKSKNTLFLPSSMKREGLLSAAFGTKVVKCRVAFSQSLEKSALLSEDLF CCCCCEEEEECCCCCCEEECCCCCCHHCCHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH EELLIPHKSRADFLIHGQTVHIGPLIGVFTAGFTSSPSRPLRDRTAFFSKMLSLHEQANG HHHCCCCCCCCCEEEECCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC YCFVFGAHQINWEEGTVQALIYKENSWKRTAVPLPNVVYDRLPSRKTEEVPLLQQTKQRL EEEEEECEEECCCCCCEEEEEEECCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHH MNDYQIPWFNPQFFNKWDIHKLLEKNSLTASLLPKSVLHPNAEALETLCSTFDTVYIKPA HHCCCCCCCCHHHCCCHHHHHHHHHCCCCHHHCCHHHCCCCHHHHHHHHHCCCEEEEEEC DGALGTGIYKVEKTDAGLSVKHTNEEKTVVTAEYSDAASFMTSFKENNDPSAFLIQQGID CCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEECCCCC LIRLDGRPVDFRVHTNKNAEGKWTVTAIAAKISGENSITTHLATGGEVRTLAELYGDPRE EEEECCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHCCHHH RVGMMRKLSKAALAVSRVLNEHIEGFIGEIGFDLGVDHSGKVWMFEANSRPGRSIFSHPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHCCCC LKSVDYLTKRRNFEYASYLSERSITAPEKLWR CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]