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The map label for this gene is yhcK [H]

Identifier: 154685373

GI number: 154685373

Start: 915975

End: 917054

Strand: Reverse

Name: yhcK [H]

Synonym: RBAM_009390

Alternate gene names: 154685373

Gene position: 917054-915975 (Counterclockwise)

Preceding gene: 154685375

Following gene: 154685371

Centisome position: 23.4

GC content: 46.85

Gene sequence:

>1080_bases
ATGCTGAAGGAACTGTTTCTTAATTTGACGATTTTAATCACATTTAATTATCTCTTCACCGTTCTTTTTAAAGAGTCGCT
TTCACATAAAGAAGACCGTCCGATGTTTCAATTACTGAAGGGGGCGGTTTGCGGGCTTTTAGGGGTTTTTCTGATTGCTT
TCGGCTTTTCTTACTCCGATTCCATCATTGATCTCAGAAATATCCCCATTATCATCGCCGCTCTTTACGGAGGCTGGGTG
TCTACAGCAGCTGCCTTTTTCATTATCGTGGCAGGCCGTATCCTGATCAATTTCAATGCCAGCGCCATTTATTCTATCGC
CGCAGTCGGCATGATTGCGATACTTTCTGTGGCCGTATTCAGAGGAAAAAAGCCGAATCACAAAAATGCGTTCGTTATGC
TGCTCTTTTCAAATGTTATTATCACCCTGACGCTGCTGTTACTTATGCCTGAACAGCCTGCCGGGGCCCTCGTTTATTTT
TGGCTCATTTCTACCTTGGGCGGAATGCTGTCGCTGTATATCATTAAACACGAAGCCGATGCCCGCCTTTTGTTCAAGCA
ATACAAGTTTCAAGCGAATTATGATTTTCTGACGGGGATTTTTAATAAGAGAAAATTCGAGGAAGTCTCGCGCGTTCTGT
ACGATCGGGCGTCTCAATCCCCCTCGTCTCAGCTCGCGCTTATTTATTTGGATATTGATCACTTTAAGCAGATCAATGAT
CAATACGGCCATTATGAAGGGGACCAAGTGCTGAAGGAACTGGGGGCGCGCCTGAGGCTCTTACTCAGCAGTTCTGATCC
GTCAGCCCGCATCGGCGGGGAAGAATTTGCCGTGCTTATGCCCAATTGCACGTATACAAAAGGGCTTCACCTCGCAGAAG
AAATCAGGCACACGATTGACGCGAACCCGATTCTGCTGACGAGCGGAGATACAATTCCCGTGACCGTTTCCCTCGGCATC
GCGCATTATCCGACAAATACATCGGATCCTCAGACATTGCCCCTGATCGCGGACCGGATGCTGTACAAAGCGAAAACATC
AGGGCGCAATCAAGTGTGCAGCACTGAAAAAAAAGAATGA

Upstream 100 bases:

>100_bases
TTCCGATCGGTCAAGTAAGGATTGACAATATATGTATTTTTATTGATTTTTCTCTTTTCTTTCCATCCTTTCTTTAGTAA
CTTATATAAGGGTGATTGTT

Downstream 100 bases:

>100_bases
TCGCCCGAAGAGGAAATCATTCTTTCTTTTCAGTGAGAAAGCCGCCCCTCAGGAAAACAGGAATCAGGCTGCCCTCATAT
TCTTTTTCAATAAACGCCGC

Product: YhcK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLKELFLNLTILITFNYLFTVLFKESLSHKEDRPMFQLLKGAVCGLLGVFLIAFGFSYSDSIIDLRNIPIIIAALYGGWV
STAAAFFIIVAGRILINFNASAIYSIAAVGMIAILSVAVFRGKKPNHKNAFVMLLFSNVIITLTLLLLMPEQPAGALVYF
WLISTLGGMLSLYIIKHEADARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQIND
QYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTIDANPILLTSGDTIPVTVSLGI
AHYPTNTSDPQTLPLIADRMLYKAKTSGRNQVCSTEKKE

Sequences:

>Translated_359_residues
MLKELFLNLTILITFNYLFTVLFKESLSHKEDRPMFQLLKGAVCGLLGVFLIAFGFSYSDSIIDLRNIPIIIAALYGGWV
STAAAFFIIVAGRILINFNASAIYSIAAVGMIAILSVAVFRGKKPNHKNAFVMLLFSNVIITLTLLLLMPEQPAGALVYF
WLISTLGGMLSLYIIKHEADARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQIND
QYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTIDANPILLTSGDTIPVTVSLGI
AHYPTNTSDPQTLPLIADRMLYKAKTSGRNQVCSTEKKE
>Mature_359_residues
MLKELFLNLTILITFNYLFTVLFKESLSHKEDRPMFQLLKGAVCGLLGVFLIAFGFSYSDSIIDLRNIPIIIAALYGGWV
STAAAFFIIVAGRILINFNASAIYSIAAVGMIAILSVAVFRGKKPNHKNAFVMLLFSNVIITLTLLLLMPEQPAGALVYF
WLISTLGGMLSLYIIKHEADARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQIND
QYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTIDANPILLTSGDTIPVTVSLGI
AHYPTNTSDPQTLPLIADRMLYKAKTSGRNQVCSTEKKE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=36.4130434782609, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788381, Length=199, Percent_Identity=31.1557788944724, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=36.5269461077844, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87081881, Length=196, Percent_Identity=34.6938775510204, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.7228915662651, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=30.8139534883721, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=31.0734463276836, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787056, Length=175, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=31.0975609756098, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=191, Percent_Identity=29.8429319371728, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30.5882352941176, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 40063; Mature: 40063

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKELFLNLTILITFNYLFTVLFKESLSHKEDRPMFQLLKGAVCGLLGVFLIAFGFSYSD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SIIDLRNIPIIIAALYGGWVSTAAAFFIIVAGRILINFNASAIYSIAAVGMIAILSVAVF
CEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHH
RGKKPNHKNAFVMLLFSNVIITLTLLLLMPEQPAGALVYFWLISTLGGMLSLYIIKHEAD
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCC
ARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQIND
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHH
QYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTID
HCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCC
ANPILLTSGDTIPVTVSLGIAHYPTNTSDPQTLPLIADRMLYKAKTSGRNQVCSTEKKE
CCCEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKELFLNLTILITFNYLFTVLFKESLSHKEDRPMFQLLKGAVCGLLGVFLIAFGFSYSD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SIIDLRNIPIIIAALYGGWVSTAAAFFIIVAGRILINFNASAIYSIAAVGMIAILSVAVF
CEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHH
RGKKPNHKNAFVMLLFSNVIITLTLLLLMPEQPAGALVYFWLISTLGGMLSLYIIKHEAD
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCC
ARLLFKQYKFQANYDFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQIND
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHH
QYGHYEGDQVLKELGARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTID
HCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCC
ANPILLTSGDTIPVTVSLGIAHYPTNTSDPQTLPLIADRMLYKAKTSGRNQVCSTEKKE
CCCEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]