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The map label for this gene is yddR [H]

Identifier: 154684983

GI number: 154684983

Start: 503986

End: 504756

Strand: Reverse

Name: yddR [H]

Synonym: RBAM_005210

Alternate gene names: 154684983

Gene position: 504756-503986 (Counterclockwise)

Preceding gene: 154684992

Following gene: 154684982

Centisome position: 12.88

GC content: 36.71

Gene sequence:

>771_bases
GTGTTACACATGAATATTCAACAAATTCGTAATGCCACACTTGTTGTCGAATACGCAGGCAAAAAGTTTTTAATAGATCC
TATGTTAGCTGAGAAAGGTGCATACCCTCCATTCCCAAATGCGCCACGACAAGATCAAAATAACCCCTTGGTTGAATTGC
CAACATCTGTTGACAATATTATTAAAGATGTTGATGCTGTTATTGTTACTCATCTTCATTATGACCATTGGGATGAGGCT
GCAAAAGAGGTATTGCCAAAAGATATCAAGCTGTTCTCCCAGAATGAAGAAGATGCAACAGAAATACGAAATGCCGGATT
CAAAAATGTAGAGGTTTTAACAAAAGATACACTCTTTGAAGGTATTCAATTGATTAAAACAAAAGGCGAACACGGAAGAG
GAGAAATTTTAAAACTTGCAGGTCTTGTTTGCGGTGTTGTCTTCAAACACCAAAGCGAGAAAACGTTATATATAGCCGGA
GATACAGTATGGTATGATGCCGTTCAGGAAGAAATTGATACACATCAACCAGAAATCATTGTCGTAAATGGCGGAGATAA
TCAATTCTACGAAGGCGGTTCTCTCATCATGGGTAAAGAAGATATCTATGAAACGTATAAGGCTGCTCCAAAAGCAAAAA
TTATTGTAAGCCACATGGAAGCTGTAAATCATTGGGGATTATCAAAAGAAGAACTAAAATCCTTTATTAATGAAAAAGAA
ATCACTTCTGATGTTTTAGTGCCTGAAGATGGCGAATCATATTCATTTTAG

Upstream 100 bases:

>100_bases
TACACTTTCAAAAATCAAGTCAAGCGACAGAACGACTTGATTTGTTCTATGTATTTATTCAGCAGCTGTATGTAAACTAT
ACTCATATCAAAGAAAAGGA

Downstream 100 bases:

>100_bases
ATCTAACAGATAAAATGAAGTTTTAACTAGGGAGGGAGCTTTCATGATGTCTGTTGAAAACAATAAAGAATTAGTGCGTC
GTTACTTTGAAACGATTGAC

Product: YddR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLHMNIQQIRNATLVVEYAGKKFLIDPMLAEKGAYPPFPNAPRQDQNNPLVELPTSVDNIIKDVDAVIVTHLHYDHWDEA
AKEVLPKDIKLFSQNEEDATEIRNAGFKNVEVLTKDTLFEGIQLIKTKGEHGRGEILKLAGLVCGVVFKHQSEKTLYIAG
DTVWYDAVQEEIDTHQPEIIVVNGGDNQFYEGGSLIMGKEDIYETYKAAPKAKIIVSHMEAVNHWGLSKEELKSFINEKE
ITSDVLVPEDGESYSF

Sequences:

>Translated_256_residues
MLHMNIQQIRNATLVVEYAGKKFLIDPMLAEKGAYPPFPNAPRQDQNNPLVELPTSVDNIIKDVDAVIVTHLHYDHWDEA
AKEVLPKDIKLFSQNEEDATEIRNAGFKNVEVLTKDTLFEGIQLIKTKGEHGRGEILKLAGLVCGVVFKHQSEKTLYIAG
DTVWYDAVQEEIDTHQPEIIVVNGGDNQFYEGGSLIMGKEDIYETYKAAPKAKIIVSHMEAVNHWGLSKEELKSFINEKE
ITSDVLVPEDGESYSF
>Mature_256_residues
MLHMNIQQIRNATLVVEYAGKKFLIDPMLAEKGAYPPFPNAPRQDQNNPLVELPTSVDNIIKDVDAVIVTHLHYDHWDEA
AKEVLPKDIKLFSQNEEDATEIRNAGFKNVEVLTKDTLFEGIQLIKTKGEHGRGEILKLAGLVCGVVFKHQSEKTLYIAG
DTVWYDAVQEEIDTHQPEIIVVNGGDNQFYEGGSLIMGKEDIYETYKAAPKAKIIVSHMEAVNHWGLSKEELKSFINEKE
ITSDVLVPEDGESYSF

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 28810; Mature: 28810

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHMNIQQIRNATLVVEYAGKKFLIDPMLAEKGAYPPFPNAPRQDQNNPLVELPTSVDNI
CCCCCHHHHCCEEEEEEECCCEEEECHHHHHCCCCCCCCCCCCCCCCCCEEECCCHHHHH
IKDVDAVIVTHLHYDHWDEAAKEVLPKDIKLFSQNEEDATEIRNAGFKNVEVLTKDTLFE
HHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
GIQLIKTKGEHGRGEILKLAGLVCGVVFKHQSEKTLYIAGDTVWYDAVQEEIDTHQPEII
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEE
VVNGGDNQFYEGGSLIMGKEDIYETYKAAPKAKIIVSHMEAVNHWGLSKEELKSFINEKE
EEECCCCCEECCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ITSDVLVPEDGESYSF
HCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLHMNIQQIRNATLVVEYAGKKFLIDPMLAEKGAYPPFPNAPRQDQNNPLVELPTSVDNI
CCCCCHHHHCCEEEEEEECCCEEEECHHHHHCCCCCCCCCCCCCCCCCCEEECCCHHHHH
IKDVDAVIVTHLHYDHWDEAAKEVLPKDIKLFSQNEEDATEIRNAGFKNVEVLTKDTLFE
HHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
GIQLIKTKGEHGRGEILKLAGLVCGVVFKHQSEKTLYIAGDTVWYDAVQEEIDTHQPEII
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEE
VVNGGDNQFYEGGSLIMGKEDIYETYKAAPKAKIIVSHMEAVNHWGLSKEELKSFINEKE
EEECCCCCEECCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ITSDVLVPEDGESYSF
HCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]