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The map label for this gene is ydcN [C]

Identifier: 154248612

GI number: 154248612

Start: 5205357

End: 5206031

Strand: Direct

Name: ydcN [C]

Synonym: Xaut_4694

Alternate gene names: 154248612

Gene position: 5205357-5206031 (Clockwise)

Preceding gene: 154248611

Following gene: 154248613

Centisome position: 98.05

GC content: 66.52

Gene sequence:

>675_bases
GTGGCCGAGAGGAAGCTGAAGGGGTCCGTGGAGGTCCAGCTACCGCGCGTTCAAGAACCCGAAGATTATGTCACCGGGTC
CGGCGCGCCCGCCGCCGAGGCGGTAACCCTGGAACAGGCGCTGGGGGTGCAGGTGCGCTCGATCCGGCGCGAACTGGATC
TCACCGTGTCCGATCTCGCCGGCGCGGCGAGCATTTCCGTGGGCATGCTCTCCAAGATCGAGAATGGCCAGATTTCACCG
TCCTTGGCGACACTGCAGGCCATCTCCAAGGCGCTCAACGTGCCGATCACCACCCTGTTCTCGGCCTTTGAGGAGCGGCG
CGACTGCTCGTTCGTGCGCGCCCACCAGGGCGTCATCATCGAGCGGCGCGGCACCAAGGTGGGCCACCAGTACGAATTGC
TGGGCCACGGGCTCGGCGGCGACATCGTGGTGGAGCCCTATCTGATCACCCTGTCGGAGGAGGCGGCGCCCCACACCGGC
TTCCGCCACGCCGGGGTGGAGTTCATCTACATGCTCTCGGGCGAGGTGCTGTACCGCCATGCGGACCGCACCTACCACCT
GCGGGCCGGCGACTCGCTGATGTTCGATTCCGGCGCCGCCCATGGCCCGGAAGACCTGATCCAGCGGCCCATGACCTATC
TTTCCGTTATCGTCTACGGCCGCGACCGGCACTGA

Upstream 100 bases:

>100_bases
TGCCTTCTCTTCAGGAAGCTGGCACAATGGGACTTTCAACTGGTGATGTCGCCTCGGGGTTCTGCCCGGAGGCTGGGCGG
ACGAGCGTACGGGGGAAAGC

Downstream 100 bases:

>100_bases
GGCACCTGCCAGAAAGCCGACCCGCCCCACCCGGCTGCGTAAAAGTTTCCTCAAGCGAAAATTTTATTCGTTGTCGTTGA
CGCCCTAGTCCGTAGGGCGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Protein; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Epoxidase; Helix-Turn-Helix Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Xre Familiy; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein LacI Family; Helix-Turn-Helix Protein; Transcription Regulator

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAERKLKGSVEVQLPRVQEPEDYVTGSGAPAAEAVTLEQALGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISP
SLATLQAISKALNVPITTLFSAFEERRDCSFVRAHQGVIIERRGTKVGHQYELLGHGLGGDIVVEPYLITLSEEAAPHTG
FRHAGVEFIYMLSGEVLYRHADRTYHLRAGDSLMFDSGAAHGPEDLIQRPMTYLSVIVYGRDRH

Sequences:

>Translated_224_residues
MAERKLKGSVEVQLPRVQEPEDYVTGSGAPAAEAVTLEQALGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISP
SLATLQAISKALNVPITTLFSAFEERRDCSFVRAHQGVIIERRGTKVGHQYELLGHGLGGDIVVEPYLITLSEEAAPHTG
FRHAGVEFIYMLSGEVLYRHADRTYHLRAGDSLMFDSGAAHGPEDLIQRPMTYLSVIVYGRDRH
>Mature_223_residues
AERKLKGSVEVQLPRVQEPEDYVTGSGAPAAEAVTLEQALGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPS
LATLQAISKALNVPITTLFSAFEERRDCSFVRAHQGVIIERRGTKVGHQYELLGHGLGGDIVVEPYLITLSEEAAPHTGF
RHAGVEFIYMLSGEVLYRHADRTYHLRAGDSLMFDSGAAHGPEDLIQRPMTYLSVIVYGRDRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24467; Mature: 24336

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERKLKGSVEVQLPRVQEPEDYVTGSGAPAAEAVTLEQALGVQVRSIRRELDLTVSDLA
CCCCCCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
GAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLFSAFEERRDCSFVRAHQGVII
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCEEE
ERRGTKVGHQYELLGHGLGGDIVVEPYLITLSEEAAPHTGFRHAGVEFIYMLSGEVLYRH
EECCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEE
ADRTYHLRAGDSLMFDSGAAHGPEDLIQRPMTYLSVIVYGRDRH
CCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
AERKLKGSVEVQLPRVQEPEDYVTGSGAPAAEAVTLEQALGVQVRSIRRELDLTVSDLA
CCCCCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
GAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLFSAFEERRDCSFVRAHQGVII
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCEEE
ERRGTKVGHQYELLGHGLGGDIVVEPYLITLSEEAAPHTGFRHAGVEFIYMLSGEVLYRH
EECCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEE
ADRTYHLRAGDSLMFDSGAAHGPEDLIQRPMTYLSVIVYGRDRH
CCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA