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The map label for this gene is ddpC [H]

Identifier: 154248577

GI number: 154248577

Start: 5148712

End: 5149596

Strand: Reverse

Name: ddpC [H]

Synonym: Xaut_4658

Alternate gene names: 154248577

Gene position: 5149596-5148712 (Counterclockwise)

Preceding gene: 154248578

Following gene: 154248576

Centisome position: 97.0

GC content: 68.36

Gene sequence:

>885_bases
ATGACCCTCGCCACGGCCGACACCCCCGCCCCCCGCGGCCTTGCCGCGACCCTTGCCCACGCGCGCTACGTCATCTCCGA
CAACCCGGTCACCGGCATCGCCTTCGGCATGTTCCTGGTGCTGGTGGTGTGCGCGCTGCTGGGGCCGTTCATCGTGCCCT
ACGATCCGCTCGCCAGCGACACGGCGGCCGCGCTCCAGGCGCCGTCTGCCGCCCACTGGTTCGGCACCGACAATCTGGGG
CGGGACATCTTCTCCCGCGTCATCGTCGCGACCCGGCTCGACATGGCCATCGCGGTGTTCTCGGTGGCGCTGGTGTTCGC
GGCGGGCGGCATCGCCGGCATCGCCTCGGGCTTCTTCGGCGGCTGGACCGACCGCATCATCGGCCGCATCTCCGATACCA
TCATGGCCTTCCCGCTGTTCGTGCTGGCCATGGGCATCGTGGCGGCGCTGGGCAACACGGTGACCAACATCGTCATCGCC
ACCGCCATCATCAACTTCCCGCTCTATGTGCGCGTGGCCCGCTCGGAAGCGGCCATCCGCCGGCAGGCGGGGTTCGTACA
GGCGGCGCGCCTCACCGGCAATTCGGAATGGCGCATCCTGCTCACGACCATCCTGCCCAACATCATGCCCATCATGATGG
TGCAGATGTCGCTCACCATGGGCTACGCCATCCTCAATGCGGCGGGCCTCAGCTTCATCGGCCTCGGCGTGCGCCCGCCC
ACCCCGGAATGGGGGATCATGGTGGCGGAAGGCGCGGCCTACATCGTCTCCGGCGAATGGTGGATCGCCCTGTTCCCCGG
CCTCGCGCTCATGTTCGCGGTGTTCTGCTTCAACCTGCTGGGTGACGGTCTGCGCGACATCGTCGACCCCCAGCGCCGCA
CCTGA

Upstream 100 bases:

>100_bases
TGCAGGGCTTCGTGCTCGCCATGGCGATCCTCTACGTGGTCCTCAACCTCCTGATCGATATCGCCTACGGCATCATCGAC
CCCCGCGCGCGGAGCGAAGC

Downstream 100 bases:

>100_bases
GGGAGGCGAACATGCATGGAGTCGTGGACGTGACGGCGCAGGCAGCCAAGACTTCCGAAGCCCCCAGCGGCCCGCTGCTG
GAGGTGCGCGACCTCACCGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTLATADTPAPRGLAATLAHARYVISDNPVTGIAFGMFLVLVVCALLGPFIVPYDPLASDTAAALQAPSAAHWFGTDNLG
RDIFSRVIVATRLDMAIAVFSVALVFAAGGIAGIASGFFGGWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIA
TAIINFPLYVRVARSEAAIRRQAGFVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPP
TPEWGIMVAEGAAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT

Sequences:

>Translated_294_residues
MTLATADTPAPRGLAATLAHARYVISDNPVTGIAFGMFLVLVVCALLGPFIVPYDPLASDTAAALQAPSAAHWFGTDNLG
RDIFSRVIVATRLDMAIAVFSVALVFAAGGIAGIASGFFGGWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIA
TAIINFPLYVRVARSEAAIRRQAGFVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPP
TPEWGIMVAEGAAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
>Mature_293_residues
TLATADTPAPRGLAATLAHARYVISDNPVTGIAFGMFLVLVVCALLGPFIVPYDPLASDTAAALQAPSAAHWFGTDNLGR
DIFSRVIVATRLDMAIAVFSVALVFAAGGIAGIASGFFGGWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIAT
AIINFPLYVRVARSEAAIRRQAGFVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPPT
PEWGIMVAEGAAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=269, Percent_Identity=42.3791821561338, Blast_Score=220, Evalue=8e-59,
Organism=Escherichia coli, GI1787054, Length=254, Percent_Identity=42.9133858267717, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=40.6639004149378, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1789964, Length=256, Percent_Identity=37.890625, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1787498, Length=260, Percent_Identity=31.5384615384615, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787549, Length=255, Percent_Identity=32.5490196078431, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=24, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31206; Mature: 31075

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLATADTPAPRGLAATLAHARYVISDNPVTGIAFGMFLVLVVCALLGPFIVPYDPLASD
CCCCCCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
TAAALQAPSAAHWFGTDNLGRDIFSRVIVATRLDMAIAVFSVALVFAAGGIAGIASGFFG
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIATAIINFPLYVRVARSEAAIR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
RQAGFVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPP
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCC
TPEWGIMVAEGAAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
CCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLATADTPAPRGLAATLAHARYVISDNPVTGIAFGMFLVLVVCALLGPFIVPYDPLASD
CCCCCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
TAAALQAPSAAHWFGTDNLGRDIFSRVIVATRLDMAIAVFSVALVFAAGGIAGIASGFFG
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIATAIINFPLYVRVARSEAAIR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
RQAGFVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPP
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCC
TPEWGIMVAEGAAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT
CCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]