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The map label for this gene is ydfH [H]

Identifier: 154248573

GI number: 154248573

Start: 5143850

End: 5144566

Strand: Reverse

Name: ydfH [H]

Synonym: Xaut_4654

Alternate gene names: 154248573

Gene position: 5144566-5143850 (Counterclockwise)

Preceding gene: 154248574

Following gene: 154248571

Centisome position: 96.9

GC content: 72.52

Gene sequence:

>717_bases
ATGACCCTGCATCCGCCGCAGCCGCTCAAGGCTCCCGCATCCGCTTCGCGCCCCCGCAGGCGTCGTGCCGCCGGCCGGCC
GGTCACGCGGACCGAAGAGCTGCGCCTCCAGATCGCCGACGACATCGTGCGCGGCCGCCTTGCCCCGGGCACGCCGCTGG
AGGAGGTGGAGATCGCCAAGCGCTACGGCGTGTCCCGCACCCCGGTGCGCGAGGCGCTGCGCGACCTTGCCGCCTCTGGC
CTGGTCGAGGCGCGGCCCCATCGCAGCGCCCTTGTGGCCCAGCCCTCGCTGGAGCGGCTGCGCGGCATGTTCGACGTGAT
GGCGGAACTGGAGGCCCTGTGCGCCGGCTTGTGCGCGGTCCATATGACGGCGGCCGAGCGGGCCGGGCTGGAAGCCACCC
ACGCCGAGCTTGCCGACCTGACCCGGCGCGGCGACGAGGGCGGCTATACGGTGCTCAACGAGCGCTTCCACACCACGCTC
TATGCCGGCTCCCACAATGATTACCTGGCCGAGCTGACGCTGGCGACTCGCGCCCGGCTGCAGCCGTTCCGCCGCGCCCA
GTTCCGCACCCTGGGGCGGCTGGCGCGCTCCTATGAGGAGCACGACCGGGTGGTTACCGCCATCCTGCGTGGCGACAAGG
CCGAGGCCGCCGCCGCCATGCGCGCCCACATCCTCACCGTCGAGGTTGCCTACGAGCGTTACGCCGAGAGTGTGTGA

Upstream 100 bases:

>100_bases
GCTCACGGCGGGGGAGGGGACGGGGCATGCTCCGGTTCCTTCCCCGTCAGGACTTCACCGGAATTCGCGCCGCCGTCGAA
TCCAGGTAGTTTAATATGCC

Downstream 100 bases:

>100_bases
GGGCGGCGCGGCGTGAGTGGCGTCACTGCGCCGCTTCAGCATCCGTGAGGTTGTCGAGGCCCTGCACGATGTGCTGGGCC
AGCGCGTCCGCCAGCAGCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTLHPPQPLKAPASASRPRRRRAAGRPVTRTEELRLQIADDIVRGRLAPGTPLEEVEIAKRYGVSRTPVREALRDLAASG
LVEARPHRSALVAQPSLERLRGMFDVMAELEALCAGLCAVHMTAAERAGLEATHAELADLTRRGDEGGYTVLNERFHTTL
YAGSHNDYLAELTLATRARLQPFRRAQFRTLGRLARSYEEHDRVVTAILRGDKAEAAAAMRAHILTVEVAYERYAESV

Sequences:

>Translated_238_residues
MTLHPPQPLKAPASASRPRRRRAAGRPVTRTEELRLQIADDIVRGRLAPGTPLEEVEIAKRYGVSRTPVREALRDLAASG
LVEARPHRSALVAQPSLERLRGMFDVMAELEALCAGLCAVHMTAAERAGLEATHAELADLTRRGDEGGYTVLNERFHTTL
YAGSHNDYLAELTLATRARLQPFRRAQFRTLGRLARSYEEHDRVVTAILRGDKAEAAAAMRAHILTVEVAYERYAESV
>Mature_237_residues
TLHPPQPLKAPASASRPRRRRAAGRPVTRTEELRLQIADDIVRGRLAPGTPLEEVEIAKRYGVSRTPVREALRDLAASGL
VEARPHRSALVAQPSLERLRGMFDVMAELEALCAGLCAVHMTAAERAGLEATHAELADLTRRGDEGGYTVLNERFHTTLY
AGSHNDYLAELTLATRARLQPFRRAQFRTLGRLARSYEEHDRVVTAILRGDKAEAAAAMRAHILTVEVAYERYAESV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=120, Percent_Identity=34.1666666666667, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI87082149, Length=200, Percent_Identity=29, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48994955, Length=215, Percent_Identity=26.5116279069767, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26351; Mature: 26220

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHPPQPLKAPASASRPRRRRAAGRPVTRTEELRLQIADDIVRGRLAPGTPLEEVEIAK
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RYGVSRTPVREALRDLAASGLVEARPHRSALVAQPSLERLRGMFDVMAELEALCAGLCAV
HCCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HMTAAERAGLEATHAELADLTRRGDEGGYTVLNERFHTTLYAGSHNDYLAELTLATRARL
HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
QPFRRAQFRTLGRLARSYEEHDRVVTAILRGDKAEAAAAMRAHILTVEVAYERYAESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLHPPQPLKAPASASRPRRRRAAGRPVTRTEELRLQIADDIVRGRLAPGTPLEEVEIAK
CCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RYGVSRTPVREALRDLAASGLVEARPHRSALVAQPSLERLRGMFDVMAELEALCAGLCAV
HCCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HMTAAERAGLEATHAELADLTRRGDEGGYTVLNERFHTTLYAGSHNDYLAELTLATRARL
HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
QPFRRAQFRTLGRLARSYEEHDRVVTAILRGDKAEAAAAMRAHILTVEVAYERYAESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]