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The map label for this gene is clpS1 [H]

Identifier: 154248457

GI number: 154248457

Start: 5015164

End: 5015538

Strand: Reverse

Name: clpS1 [H]

Synonym: Xaut_4537

Alternate gene names: 154248457

Gene position: 5015538-5015164 (Counterclockwise)

Preceding gene: 154248458

Following gene: 154248456

Centisome position: 94.47

GC content: 61.07

Gene sequence:

>375_bases
ATGATGCATATTTCCATTTCCACTTTTCAGGCGCCGGCTCTGGCCGGCCCCGACACGCCACCCCGCAGGGGCGGCGATGG
TCCCGGCACGGCGGTCATTTCCCGCACCAAGCCGCAGACCAAGCGGCCCTCGCTCTATCGGGTGCTGCTGCTGAACGACG
ACTACACGCCCATGGAGTTCGTGGTGCATGTGCTGGAACGGTTCTTCAACAAGGACCGTGACCAGGCGAACACGATCATG
CTCCACGTGCACAATCACGGGGTCGGGGAGTGCGGCGTTTTCACCTATGAGGTCGCCGAGACCAAGGTGACGCAGGTGAT
GGATTTCGCCCGCAAGCACCAGCACCCGCTCCAGTGCGTGATGGAAAAGAAATAA

Upstream 100 bases:

>100_bases
ACTGGCGAAGACGCGTCGCTCTTCCTATTATTCTCCTCATTCAGGGAGCTGCGCCAAACTCCGCCTGACGGCCGGAGCAG
CGGAACAGGGCGCGACGGAC

Downstream 100 bases:

>100_bases
GCCGGCTCACGCCCTTCGCTAAAAAATCGTGATGAACGAATTTCGGGTCGCTGAGGCCCGGAATGCGAGGCGCTGTCTTG
TGCTCGCCATGGGCGACAGG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MMHISISTFQAPALAGPDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEFVVHVLERFFNKDRDQANTIM
LHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK

Sequences:

>Translated_124_residues
MMHISISTFQAPALAGPDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEFVVHVLERFFNKDRDQANTIM
LHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK
>Mature_124_residues
MMHISISTFQAPALAGPDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEFVVHVLERFFNKDRDQANTIM
LHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=90, Percent_Identity=53.3333333333333, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 14031; Mature: 14031

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHISISTFQAPALAGPDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEF
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHH
VVHVLERFFNKDRDQANTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCV
HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHH
MEKK
CCCC
>Mature Secondary Structure
MMHISISTFQAPALAGPDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEF
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHH
VVHVLERFFNKDRDQANTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCV
HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHH
MEKK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]