| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
Click here to switch to the map view.
The map label for this gene is 154248406
Identifier: 154248406
GI number: 154248406
Start: 4978431
End: 4979717
Strand: Reverse
Name: 154248406
Synonym: Xaut_4486
Alternate gene names: NA
Gene position: 4979717-4978431 (Counterclockwise)
Preceding gene: 154248407
Following gene: 154248405
Centisome position: 93.8
GC content: 73.04
Gene sequence:
>1287_bases ATGAGCATCTGGAGCGACGCCTCGGACCTGCTGCCCGGCCTCAAGCCGGGCGCCTTCCGTGGCATCCCTTTCTTCATTCC GGACATCTCCCACTCGGTCGGCCGGCGCATCGTGCTGACGTGGTTCCCCGGCAAGGATGCGCCGGCGGCGGATGACCTGG GGCGGTCGGATGGGCGCATCACGGTGCGCGGCCTGGTGCTTGGCGACGACTATGTCGCCCGCGCTCTGGCCCTGCAGGGC GCCTTCCAGCAGGCTGGCCCCGGCACCCTGCTGCATCCCTGGCTCGGCGAGATGCGCGTCGTAGTGCCCGAGGACGGGGC GCAGATCTCCTTCCGCTCCACCGAGCTGCGGATGGTGAGTGTCGACGTCACCTTCATGCCCGTTCCGCGGGGGGTGGCTT TCGCCGGTTCGTCTCTTTCGGCCCTCTTATCGTCTGCTTCCGGGCTGCTTTCCGCCGCCACGACCTTCAGCGCCAGCGCG CTTTCCGGGCTCGCCGTGGCGGTGGGCACCTGGTCCTCCGCCATGACCACCGCGCTTGGCATGGGCACGGTGGTGTCGTC GCTGGTCGCCGCTTCATCGGCCGCTGCATCCCTGGAGCTGCTGATCGAGGCGAGCCAGGCCACCTTGTCGACCGCCACCA CCGCCGGCGCCGGCGCCACCTCCGCAGCAGCGGTCGCCGCCGCCCTCACCGCCCTCGCCACGCCCGTGGCCGACACCGCG ATCGGCACGCCCACCGCCGCCATCGGCATCGGCGGGAGCGCGAGCGCGCCGGTGGCGGCGCTGACGGCGCGGGCGGGCAC GACGCTCCTGCTGCAGATGGCGGATGCCATGCGCGCCACCGCCGCCCTGGGCGCGCCGGCTGCAGGTGTGCGCCTCACCG CCCAGCTCGCGACGCTGGCCGAGGCCGCCCGTGTCGCCGCCGAGATCGACCATGAGAGCCGCCAGGAGGCGCAGTCCTGG CACGATGCGCTCGATGCCGCCCTCGACACTGCGGCCGACGACGTGGCCGCCATGGCAGAGAGCCTGCCGGCGGAGGTCGC CCCGCTGTGGGGTGCCGTCGCCGAGCTGCGGGGCGCGCTGGCCCGTGACCTCAACGAGATCATCGGCCGCCTGCCTGCGG TGCGGCAGGTGACGCCGGCGGGCACCGTCTCCGCCTGGATCATCGCCACCGCGTTCGCCGGTGACGATCCCGCCGCCATC GTGCCCATGCTCGATGACATCGTCGCCCGCAATCGGCTCCGCCAGCCCGGCGCCGTGCCGCCCGAGCCGCTGGAGATCCT GCTGTGA
Upstream 100 bases:
>100_bases GGCGGCGGACAAGGCGCAGAGCGTTGATTGTGAGCGCCTCGCTCAACGTGCTTCTGGTGTTCTTCTTCGCCATCCTCTTC GCTGGTGGAGCGCTGTGCCC
Downstream 100 bases:
>100_bases CGGGGGCCATGACCGACCGCATCTCCCTGACCATGGGCGGCCAAGTCTATCGCACATGGACCTCCTTCGAGCTGACACGC GACCTCTCGGAGATCTCCGG
Product: Mu-like prophage DNA circulation protein-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MSIWSDASDLLPGLKPGAFRGIPFFIPDISHSVGRRIVLTWFPGKDAPAADDLGRSDGRITVRGLVLGDDYVARALALQG AFQQAGPGTLLHPWLGEMRVVVPEDGAQISFRSTELRMVSVDVTFMPVPRGVAFAGSSLSALLSSASGLLSAATTFSASA LSGLAVAVGTWSSAMTTALGMGTVVSSLVAASSAAASLELLIEASQATLSTATTAGAGATSAAAVAAALTALATPVADTA IGTPTAAIGIGGSASAPVAALTARAGTTLLLQMADAMRATAALGAPAAGVRLTAQLATLAEAARVAAEIDHESRQEAQSW HDALDAALDTAADDVAAMAESLPAEVAPLWGAVAELRGALARDLNEIIGRLPAVRQVTPAGTVSAWIIATAFAGDDPAAI VPMLDDIVARNRLRQPGAVPPEPLEILL
Sequences:
>Translated_428_residues MSIWSDASDLLPGLKPGAFRGIPFFIPDISHSVGRRIVLTWFPGKDAPAADDLGRSDGRITVRGLVLGDDYVARALALQG AFQQAGPGTLLHPWLGEMRVVVPEDGAQISFRSTELRMVSVDVTFMPVPRGVAFAGSSLSALLSSASGLLSAATTFSASA LSGLAVAVGTWSSAMTTALGMGTVVSSLVAASSAAASLELLIEASQATLSTATTAGAGATSAAAVAAALTALATPVADTA IGTPTAAIGIGGSASAPVAALTARAGTTLLLQMADAMRATAALGAPAAGVRLTAQLATLAEAARVAAEIDHESRQEAQSW HDALDAALDTAADDVAAMAESLPAEVAPLWGAVAELRGALARDLNEIIGRLPAVRQVTPAGTVSAWIIATAFAGDDPAAI VPMLDDIVARNRLRQPGAVPPEPLEILL >Mature_427_residues SIWSDASDLLPGLKPGAFRGIPFFIPDISHSVGRRIVLTWFPGKDAPAADDLGRSDGRITVRGLVLGDDYVARALALQGA FQQAGPGTLLHPWLGEMRVVVPEDGAQISFRSTELRMVSVDVTFMPVPRGVAFAGSSLSALLSSASGLLSAATTFSASAL SGLAVAVGTWSSAMTTALGMGTVVSSLVAASSAAASLELLIEASQATLSTATTAGAGATSAAAVAAALTALATPVADTAI GTPTAAIGIGGSASAPVAALTARAGTTLLLQMADAMRATAALGAPAAGVRLTAQLATLAEAARVAAEIDHESRQEAQSWH DALDAALDTAADDVAAMAESLPAEVAPLWGAVAELRGALARDLNEIIGRLPAVRQVTPAGTVSAWIIATAFAGDDPAAIV PMLDDIVARNRLRQPGAVPPEPLEILL
Specific function: Unknown
COG id: COG4228
COG function: function code R; Mu-like prophage DNA circulation protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein N [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009826 - ProDom: PD332323 [H]
Pfam domain/function: PF07157 DNA_circ_N [H]
EC number: NA
Molecular weight: Translated: 43072; Mature: 42941
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIWSDASDLLPGLKPGAFRGIPFFIPDISHSVGRRIVLTWFPGKDAPAADDLGRSDGRI CCCCCCHHHHCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEE TVRGLVLGDDYVARALALQGAFQQAGPGTLLHPWLGEMRVVVPEDGAQISFRSTELRMVS EEEEEEECCHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCEEEEECCEEEEEE VDVTFMPVPRGVAFAGSSLSALLSSASGLLSAATTFSASALSGLAVAVGTWSSAMTTALG EEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHH MGTVVSSLVAASSAAASLELLIEASQATLSTATTAGAGATSAAAVAAALTALATPVADTA HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC IGTPTAAIGIGGSASAPVAALTARAGTTLLLQMADAMRATAALGAPAAGVRLTAQLATLA CCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH EAARVAAEIDHESRQEAQSWHDALDAALDTAADDVAAMAESLPAEVAPLWGAVAELRGAL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ARDLNEIIGRLPAVRQVTPAGTVSAWIIATAFAGDDPAAIVPMLDDIVARNRLRQPGAVP HHHHHHHHHCCCCHHCCCCCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC PEPLEILL CCCHHHCC >Mature Secondary Structure SIWSDASDLLPGLKPGAFRGIPFFIPDISHSVGRRIVLTWFPGKDAPAADDLGRSDGRI CCCCCHHHHCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEE TVRGLVLGDDYVARALALQGAFQQAGPGTLLHPWLGEMRVVVPEDGAQISFRSTELRMVS EEEEEEECCHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCEEEEECCEEEEEE VDVTFMPVPRGVAFAGSSLSALLSSASGLLSAATTFSASALSGLAVAVGTWSSAMTTALG EEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHH MGTVVSSLVAASSAAASLELLIEASQATLSTATTAGAGATSAAAVAAALTALATPVADTA HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC IGTPTAAIGIGGSASAPVAALTARAGTTLLLQMADAMRATAALGAPAAGVRLTAQLATLA CCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH EAARVAAEIDHESRQEAQSWHDALDAALDTAADDVAAMAESLPAEVAPLWGAVAELRGAL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ARDLNEIIGRLPAVRQVTPAGTVSAWIIATAFAGDDPAAIVPMLDDIVARNRLRQPGAVP HHHHHHHHHCCCCHHCCCCCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC PEPLEILL CCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]