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The map label for this gene is ihfA

Identifier: 154248306

GI number: 154248306

Start: 4862058

End: 4862375

Strand: Direct

Name: ihfA

Synonym: Xaut_4386

Alternate gene names: 154248306

Gene position: 4862058-4862375 (Clockwise)

Preceding gene: 154248305

Following gene: 154248307

Centisome position: 91.58

GC content: 64.78

Gene sequence:

>318_bases
ATGGCTGGTCGGACCGTAACGCGGGCGGATCTGTGTGAGGCCGTCTATCAGCAGGTGGGGCTGTCTCGCACCGAATCCGC
CCAGCTGGTGGAAATGGTTCTGAAGGAGATTGCCGACTGCCTGGCCCGCGGCGAGACGGTGAAACTGTCTTCCTTCGGCT
CCTTCGTGGTGCGCGAGAAGGGCGAGCGGGTCGGCCGCAATCCCAAGACCGGCGAGGAAGTGCCGATCGAGCCGCGCCGC
GTCATGGTTTTCAAGCCGTCCAGCATCCTCAAGCACCGCATCAACGGGACCGTCGGCGACGGCCTCGACGAGGACTGA

Upstream 100 bases:

>100_bases
TCCTGAAGTGTGCTCTGTTAAAATTGCCGAAGTTCTGCGATCCGCATCCTTCGAACGGGGCTTCGAGCGGTTCGCCATCT
TTCTGGGGCCGGGGTGACAA

Downstream 100 bases:

>100_bases
TCCCACCCAAGGGGCAGGGGACGAGGACGACCCGTCCAAAGGGCGGGGGACAAGGCGCGACGCGCCGCCGCGCAGGGCGC
CACCACAACTTCCCGCACGC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MAGRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGERVGRNPKTGEEVPIEPRR
VMVFKPSSILKHRINGTVGDGLDED

Sequences:

>Translated_105_residues
MAGRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGERVGRNPKTGEEVPIEPRR
VMVFKPSSILKHRINGTVGDGLDED
>Mature_104_residues
AGRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGERVGRNPKTGEEVPIEPRRV
MVFKPSSILKHRINGTVGDGLDED

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=46.6666666666667, Blast_Score=96, Evalue=5e-22,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=27.7777777777778, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=36.2637362637363, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=32.5842696629214, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_XANP2 (A7INL3)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001419264.1
- ProteinModelPortal:   A7INL3
- SMR:   A7INL3
- STRING:   A7INL3
- GeneID:   5422008
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_4386
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   PRK00285
- BioCyc:   XAUT78245:XAUT_4386-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11547; Mature: 11416

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREK
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
GERVGRNPKTGEEVPIEPRRVMVFKPSSILKHRINGTVGDGLDED
HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AGRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
GERVGRNPKTGEEVPIEPRRVMVFKPSSILKHRINGTVGDGLDED
HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA