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The map label for this gene is exbD [H]

Identifier: 154248194

GI number: 154248194

Start: 4741372

End: 4741866

Strand: Direct

Name: exbD [H]

Synonym: Xaut_4274

Alternate gene names: 154248194

Gene position: 4741372-4741866 (Clockwise)

Preceding gene: 154248193

Following gene: 154248195

Centisome position: 89.31

GC content: 70.51

Gene sequence:

>495_bases
ATGGCCGCCAAGCTCGACCATGGCGGCGGGGACGACCTCGCCGAGAATCACGAAATCAACGTCACGCCCTTCATCGACGT
GATGCTGGTGCTGCTCATCATCTTCATGGTGGCGGCCCCGCTCGCCACGGTGGACGTGAAGGTGGACCTGCCGGCCTCCA
ACGCCCAGCCCCAGCCGCGGCCGGACAAGCCCCTGTTCCTCACCGTGAAGAAGGACCTGTCGCTGGCGCTGGGGGATGAT
GTGCTGGAGCGGTCTCTGCTCGGCCAGGCGCTCGACGGCAAGACCTCCGGCGACCGCCAGCAGCGGGTGTTCGTGCGCGC
CGACAAGGCGGTGCCCTTCGGCGACGTGATGGAGGTGATGAACCTGCTGCGCTCGGCCGGCTACCTCAAGGTGGCGCTGG
TGGGCCTGGAAGGGGAGGCGGCGCCCGTGCCCCCGGCACCCAATGCGCCAGCCACAGCCCCCGCGCCAGCGACCGCCCCG
GGGGCGCGGCCGTGA

Upstream 100 bases:

>100_bases
CACATCGGCCGAAGTCATGCGCCATCTGTCCCGCGATCTCGACCGGGCGGCCAGCGGCATGGAGCCCCGCCGCCTGCACG
CCGCTGCGGAGTGAGTCACC

Downstream 100 bases:

>100_bases
GCGCGGTCCATCATTGGCACGATTTCGACCGCAACCACGTCCGTGACACGGTGCTGCGGCTCGCCGCCGGCGCGCTGGTC
ATCGTCACGGTCCATGCGGT

Product: TonB system transport protein ExbD type-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MAAKLDHGGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASNAQPQPRPDKPLFLTVKKDLSLALGDD
VLERSLLGQALDGKTSGDRQQRVFVRADKAVPFGDVMEVMNLLRSAGYLKVALVGLEGEAAPVPPAPNAPATAPAPATAP
GARP

Sequences:

>Translated_164_residues
MAAKLDHGGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASNAQPQPRPDKPLFLTVKKDLSLALGDD
VLERSLLGQALDGKTSGDRQQRVFVRADKAVPFGDVMEVMNLLRSAGYLKVALVGLEGEAAPVPPAPNAPATAPAPATAP
GARP
>Mature_163_residues
AAKLDHGGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASNAQPQPRPDKPLFLTVKKDLSLALGDDV
LERSLLGQALDGKTSGDRQQRVFVRADKAVPFGDVMEVMNLLRSAGYLKVALVGLEGEAAPVPPAPNAPATAPAPATAPG
ARP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=131, Percent_Identity=58.0152671755725, Blast_Score=151, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 17161; Mature: 17030

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKLDHGGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASNAQPQPR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PDKPLFLTVKKDLSLALGDDVLERSLLGQALDGKTSGDRQQRVFVRADKAVPFGDVMEVM
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLRSAGYLKVALVGLEGEAAPVPPAPNAPATAPAPATAPGARP
HHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAKLDHGGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASNAQPQPR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PDKPLFLTVKKDLSLALGDDVLERSLLGQALDGKTSGDRQQRVFVRADKAVPFGDVMEVM
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLRSAGYLKVALVGLEGEAAPVPPAPNAPATAPAPATAPGARP
HHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]