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The map label for this gene is yubM [H]

Identifier: 154247946

GI number: 154247946

Start: 4450998

End: 4453061

Strand: Reverse

Name: yubM [H]

Synonym: Xaut_4025

Alternate gene names: 154247946

Gene position: 4453061-4450998 (Counterclockwise)

Preceding gene: 154247947

Following gene: 154247945

Centisome position: 83.88

GC content: 67.54

Gene sequence:

>2064_bases
ATGGCCACGGCAGTTCAGAAGATTATCCTTTCGTCCTCGCGAGACATTCCCTTCAACAAGCTGGTGCTCAGCCAGTCCAA
CGTCCGCCGGGTGAAAGCTGGCGTCTCCATCGAGGAGCTTGCCGAGGACATCGCCCGGCGGGGCCTGCTGCAGGGCCTCA
ATGTCCGCGCCGTCCTCGATGCGGATGGCGTCGAGACCGGCATGTACGAGATCCCGGCGGGTGGGCGGCGCTACCGGGCT
CTGGAGCTTCTGGTGAAGCGCAAGCGCCTCGCCCGGACCGCGCCGGTACCCTGCATCGTGCGCGAGGGCGGTATCGCCGA
GGAGGATTCCCTTGCCGAGAATGTCCAGCGGGCTCCGCTTCATCCCCTCGACCAGTTCCGCGCCTTTCTCGCTCTGCGGG
AGAAGGGCCAGTCCGAGGAGGAGATCACCGCCGCCTTCTTCGTCTCGGCCGCGGTGGTGAAGCAGCGGCTGAAGCTTGCA
TCGCTTTCCCCGAAGCTCCTCGACACCTATGCCGAGGATGGCCTCACCCTTGACCAGCTCATGGCCTTCACCGTGTCGGG
CGATCATGAGCGGCAGGAGCAGGTGCTGGAGCGTCTCGCCCAGACCTACGATAAGCAGCCCTATGTCATCCGGCGCATGC
TGACGGAGGGCGCCGTGCGGGCGTCCGACAAGCGGGCCCGCTTCATCGGCATTGAGGCCTACGAGACGGCCGGCGGCACT
GTGCTGCGCGACCTGTTCCAGGGGGACGACGGCGGCTGGCTGCAGGAGGTGGCCCTCGTCGACCGGATGGTGGCCGAGAA
GCTCGCCGCCGAGGTCGACGCGATCCGCAGCGAAGGCTGGAAGTGGATCGAGGTCGCGCCCGACTTCGCCTATGGCCACA
CCTACGGCCTGCGCCACCTGCGGGGTGAGCCGACGCCCCTGACCGAGGAGGAGGAGGCAGCTCGGGCGACGGCCCAGGCC
GCATATGATCGCCTCTCCGAAGAACATGCCGATGCCGACGAGCTTCCCGAACAGGTCGACGTGCGGCTCGGGGAACTCGA
GGAGATGCTGGAGGCCTTTGAGACGCGGCCCCTGGTGTTCGATCCGGCGGAGGTCGCCCGGGCCGGCGGCTTCGTCAGCA
TCGCGCAGGATGGGAAGCTGCGAGTGGAACGGGGCTATGTCCGCCCGGAGGACGAGGTGCTGGTCGAAGACGACCATACC
CCTCCCGTCGAAACCGACGGTGCCAACCTCGTGGCCTCGTCCCCTCGGCAGGAGGCGGCAGCAGGCGATGCTCCTGGCGA
GCCCGAGGAGGAGGACGGCCTCACCCCCATCTCCGACCGGCTGCTCACGGAACTGACCACCCATCGCACCCTCGGCCTGC
GCCATGCGCTGGGCGAGCAGCCCGATGTGGCCTTCCTCGCCGCGGTCCACGCTCTGACGCTGAAGGCCTTCTACGTCTAT
GGCTCGGACAGCTGCCTTGAGCTCGATCTCAAGAGCGTCTCGTTCAATGCCCAGGCGCCGGGCCTCAACGACAGCATCTC
GGCAGAGGCCATCCGCATCCGGCATGAGAGCTGGGCCAAGGCACTCCCCAAGGAGTTCGCAGGCTTGTGGGATACCCTGC
GCGCGTGGGACCACGACAGCCGGTCTGCGCTGTTCGCCCATGTGGTGAGCCTCTCGGTCAATGCGGTGCATGAGGCCTGG
AACCGCCGTCCCCGCGCCTTCGCTCATGCCGACCGGTTGGCGCAGGCGGTAGGGCTCGACATGGCGGCGGCGGGATGGAG
GCCCACTGTCGACACCTTCCTCGGCCGGGTCACCAAGGCCCGCATCCTGCAGGCGGTGACCGAGGCGAAGGGGGAATGTG
CAGCCGAGCGGATCGCCCACCTCAAGAAGGGCGACATGGCGCGGGAGGCAGAAGCCCTCCTTACCGACAGCGGCTGGCTC
CCGGAGGCGCTGCGGACCCAGCCCTTGGACACCGTCGGCGAGAAAACGGCGGAGAAGGATGGCGAAACGGCCATGGCCGA
CAGCGAGGACCTCGCCGACACTGAGGAGCCCGAAGCGATCTCCTCCTCGATCGCTGCCGAATAA

Upstream 100 bases:

>100_bases
TTGCGGCGCCGCCCTCAGAGGAAGAGGGCGGCGCCGTTCTTCGTGACGGGTTGGAGGCCAGAGAGAGGCTCTCCGGCCGC
CCGTTGCGGAGAAGCATCCC

Downstream 100 bases:

>100_bases
TCCTCCCCGGGCAACCTGGCCCGCCGCCTGTGGCTCCGCGATCCCCCCTATCGCGTGGCCCGGACGGCGGGCCATTTTCT
TGGAGCGTCCCCATGACAGA

Product: parB-like partition protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MATAVQKIILSSSRDIPFNKLVLSQSNVRRVKAGVSIEELAEDIARRGLLQGLNVRAVLDADGVETGMYEIPAGGRRYRA
LELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEITAAFFVSAAVVKQRLKLA
SLSPKLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQTYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYETAGGT
VLRDLFQGDDGGWLQEVALVDRMVAEKLAAEVDAIRSEGWKWIEVAPDFAYGHTYGLRHLRGEPTPLTEEEEAARATAQA
AYDRLSEEHADADELPEQVDVRLGELEEMLEAFETRPLVFDPAEVARAGGFVSIAQDGKLRVERGYVRPEDEVLVEDDHT
PPVETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHALGEQPDVAFLAAVHALTLKAFYVY
GSDSCLELDLKSVSFNAQAPGLNDSISAEAIRIRHESWAKALPKEFAGLWDTLRAWDHDSRSALFAHVVSLSVNAVHEAW
NRRPRAFAHADRLAQAVGLDMAAAGWRPTVDTFLGRVTKARILQAVTEAKGECAAERIAHLKKGDMAREAEALLTDSGWL
PEALRTQPLDTVGEKTAEKDGETAMADSEDLADTEEPEAISSSIAAE

Sequences:

>Translated_687_residues
MATAVQKIILSSSRDIPFNKLVLSQSNVRRVKAGVSIEELAEDIARRGLLQGLNVRAVLDADGVETGMYEIPAGGRRYRA
LELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEITAAFFVSAAVVKQRLKLA
SLSPKLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQTYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYETAGGT
VLRDLFQGDDGGWLQEVALVDRMVAEKLAAEVDAIRSEGWKWIEVAPDFAYGHTYGLRHLRGEPTPLTEEEEAARATAQA
AYDRLSEEHADADELPEQVDVRLGELEEMLEAFETRPLVFDPAEVARAGGFVSIAQDGKLRVERGYVRPEDEVLVEDDHT
PPVETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHALGEQPDVAFLAAVHALTLKAFYVY
GSDSCLELDLKSVSFNAQAPGLNDSISAEAIRIRHESWAKALPKEFAGLWDTLRAWDHDSRSALFAHVVSLSVNAVHEAW
NRRPRAFAHADRLAQAVGLDMAAAGWRPTVDTFLGRVTKARILQAVTEAKGECAAERIAHLKKGDMAREAEALLTDSGWL
PEALRTQPLDTVGEKTAEKDGETAMADSEDLADTEEPEAISSSIAAE
>Mature_686_residues
ATAVQKIILSSSRDIPFNKLVLSQSNVRRVKAGVSIEELAEDIARRGLLQGLNVRAVLDADGVETGMYEIPAGGRRYRAL
ELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEITAAFFVSAAVVKQRLKLAS
LSPKLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQTYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYETAGGTV
LRDLFQGDDGGWLQEVALVDRMVAEKLAAEVDAIRSEGWKWIEVAPDFAYGHTYGLRHLRGEPTPLTEEEEAARATAQAA
YDRLSEEHADADELPEQVDVRLGELEEMLEAFETRPLVFDPAEVARAGGFVSIAQDGKLRVERGYVRPEDEVLVEDDHTP
PVETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHALGEQPDVAFLAAVHALTLKAFYVYG
SDSCLELDLKSVSFNAQAPGLNDSISAEAIRIRHESWAKALPKEFAGLWDTLRAWDHDSRSALFAHVVSLSVNAVHEAWN
RRPRAFAHADRLAQAVGLDMAAAGWRPTVDTFLGRVTKARILQAVTEAKGECAAERIAHLKKGDMAREAEALLTDSGWLP
EALRTQPLDTVGEKTAEKDGETAMADSEDLADTEEPEAISSSIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 75340; Mature: 75209

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAVQKIILSSSRDIPFNKLVLSQSNVRRVKAGVSIEELAEDIARRGLLQGLNVRAVLD
CCHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEC
ADGVETGMYEIPAGGRRYRALELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPL
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEITAAFFVSAAVVKQRLKLASLSPKLLDTYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHH
MAFTVSGDHERQEQVLERLAQTYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYETAGGT
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHH
VLRDLFQGDDGGWLQEVALVDRMVAEKLAAEVDAIRSEGWKWIEVAPDFAYGHTYGLRHL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RGEPTPLTEEEEAARATAQAAYDRLSEEHADADELPEQVDVRLGELEEMLEAFETRPLVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCEE
DPAEVARAGGFVSIAQDGKLRVERGYVRPEDEVLVEDDHTPPVETDGANLVASSPRQEAA
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHC
AGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHALGEQPDVAFLAAVHALTLKAFYVY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEE
GSDSCLELDLKSVSFNAQAPGLNDSISAEAIRIRHESWAKALPKEFAGLWDTLRAWDHDS
CCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RSALFAHVVSLSVNAVHEAWNRRPRAFAHADRLAQAVGLDMAAAGWRPTVDTFLGRVTKA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHH
RILQAVTEAKGECAAERIAHLKKGDMAREAEALLTDSGWLPEALRTQPLDTVGEKTAEKD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCC
GETAMADSEDLADTEEPEAISSSIAAE
CCCCCCCCHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
ATAVQKIILSSSRDIPFNKLVLSQSNVRRVKAGVSIEELAEDIARRGLLQGLNVRAVLD
CHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEC
ADGVETGMYEIPAGGRRYRALELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPL
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEITAAFFVSAAVVKQRLKLASLSPKLLDTYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHH
MAFTVSGDHERQEQVLERLAQTYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYETAGGT
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHH
VLRDLFQGDDGGWLQEVALVDRMVAEKLAAEVDAIRSEGWKWIEVAPDFAYGHTYGLRHL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RGEPTPLTEEEEAARATAQAAYDRLSEEHADADELPEQVDVRLGELEEMLEAFETRPLVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCEE
DPAEVARAGGFVSIAQDGKLRVERGYVRPEDEVLVEDDHTPPVETDGANLVASSPRQEAA
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHC
AGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHALGEQPDVAFLAAVHALTLKAFYVY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEE
GSDSCLELDLKSVSFNAQAPGLNDSISAEAIRIRHESWAKALPKEFAGLWDTLRAWDHDS
CCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RSALFAHVVSLSVNAVHEAWNRRPRAFAHADRLAQAVGLDMAAAGWRPTVDTFLGRVTKA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHH
RILQAVTEAKGECAAERIAHLKKGDMAREAEALLTDSGWLPEALRTQPLDTVGEKTAEKD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCC
GETAMADSEDLADTEEPEAISSSIAAE
CCCCCCCCHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]