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The map label for this gene is rfbC [H]

Identifier: 154247731

GI number: 154247731

Start: 4220529

End: 4222478

Strand: Reverse

Name: rfbC [H]

Synonym: Xaut_3807

Alternate gene names: 154247731

Gene position: 4222478-4220529 (Counterclockwise)

Preceding gene: 154247733

Following gene: 154247730

Centisome position: 79.54

GC content: 68.0

Gene sequence:

>1950_bases
ATGTCGTGGTTCACAAATCGATCTCGGCCGCAGCAGGCGCAAGGCGGCAGCGCAGCTGAACCCGAACCTCCTGAACCCCA
TGAAGTTCAAGAACCCGCAGCCGACCCCGCTCCGCCAGCGCAAGCCCCTGAAGAAAAAGAGGTTATCTGGCAGCGCCCCG
TCGAAGGCCCGGTCTGGCCGCCAGTGGTTCAGACCGACTCTGCCGGCACCCACCGGGACGGGGCGGGCCTCGACCGGCTG
TATTTCGACGGCCAGATTCTGGTCCTCACCGGCTGGACGAGCGGCGACGCAACCCTCGGACTTTACAGCGAAAAAGAGCC
CCTCGCCCCTCTCCTGCGGGTTGAAGTGCCGCGCCCCGACGTGGCCACCGCCTATGCCTTCTCCAGTCCAGTCACCGGCT
ACCTCCTCCTCTGGCGTGGCCCCTTCCCGGAAGGCGCGAAGGTGCACGCCAGGGCCGGCGGGCGGAAGCAGAAAAGCGTT
GCACTGCAAGACTTTGCTGCCGCCGACCTTGAGCCTGACCTGTCCCGTATCCTGCGCGAATACGCCCCGGCCCGGGGCGT
CCTGTTCGATGCGCTGCGCGATTTGCCCGACCTTTTGCGCACCGTCGCCTGGTCCGCCACCCCCTCCCACCGCCCCGGCG
ACCCCCGCGGCTACATCGACATCCTGAAAACCGTCCCCGACGCCGGCGGCCTCTGCGTCGGCTGGTCGCTCGGCCGCGCC
GACTTCTTCGTCGTCGACGACAGGGGCGCGTGCCTCGATCTGGCGGGTGCGCTGCGCTGGAACCGACCCGACATTTTCGA
AGGCTTTTCAGCGGATTACGGGGCCGACTGCGCCGAAGCCGGCTTCCTGCAGGCGCTGCCGCCGACCGCTCGCGGAGGCT
CCGTGGTGCGCCTTCTCGCCCGGGCCGGCGACGACCTCATCCTGCTCCATGAGCGCACCAGCGAGCCCGCCCCCCTCGAT
GCGGTGGGCTATGCGCGCTGGGCCTTCAGCCTGCCGGTGCCGCCCGAGCGCATGGTGGAGCGCTTCGCCGCCCACGACGG
CCCGCTGCTGCAGCGTCTGATCGCCCGCATGCGCCAGCACCCGCGAAACCAGCCCCTCGTGCGGCGCATCGGCCCGGTCG
CGGCCGAGCCGGAGGTGTCGCTGCTCATCCCGCTGTTCGGTCGCTACGACTTCGTGGACCATCAACTGCTTGAATTTGCT
GACGATGCTTTCATCCGCGAGCGCTGCGAGGTGCTCTATATCGTCGATGATCCCAACATCGCGCAGCCCGTGCAGTCCGC
CATGGAGCGGTGGTGGCAACTCTACCGGGTGCCACTGACCGTGGTCTGGGGCGGACGCAACAGGGGCTTTTCCGGCGCCA
ACAACCTGGGCCTGTCGGTGGCGCGGGGACGCCAGATCCTGTTCCTGAATTCCGATGTCATCCCCACCGCCCCCGGCTGG
CTCGACGCCTTGAGCGCCCGGCTCGACGACAATCCGGAGTATGCGCTGCTTGGTACCCGGCTGCTATTTCCCAGCGGCGG
CGTGCAGCATGACGGCATGACATTCGAGTACAGCCCGGCCTACGGGGTCTATCTGAACCAGCATCCCGGCAAGGGCCTCG
CGGCCGGGCCGGCGCCAGCGGGTGCCATTCTCGACCAAGCCGCTGCCACCGGAGCCTGCCTCATCGGCCATCGCGCAGAA
TTGCTGGAGCTTGGCGGCTTCTGCGAGGACTACCTCATCGGTGATTTCGAGGATTCCCACCTCTGCCTGACGGCGGAAGC
GGCGGGGCGGCGCGTGGGCGTGTGCCCAGACATCGCGCTGACGCACCTGGAGCGGCAGTCCCTGGGCCTTTTCGGTTCCG
GCGACTTCCGGGTGCGGGTGATGTTGTTCAACGCCTGGCTGCACCAGGAGCGCTGGCGCGAGGCGCTGGATCGACACGCG
ATGCACGGGATGGCGGGAGAGCGTCTTTGA

Upstream 100 bases:

>100_bases
TATGCAAATTGACGTCCCCTTACGCGAGTTCTAATTGACATGTCGGGGATTGCGGGGACGGTGCCATTGCCTCTGGACCC
TGCTGGGGCGGGTTAAGATC

Downstream 100 bases:

>100_bases
CCGGGACCATTCTTGTCATTTCCCATGGCCATGTGGATTTCAGCGCCGGCGGCGCCGAAGTTGCGGCCTATCAACTGTTC
GCGGCCCTGGGCAAGGCGGA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 648

Protein sequence:

>649_residues
MSWFTNRSRPQQAQGGSAAEPEPPEPHEVQEPAADPAPPAQAPEEKEVIWQRPVEGPVWPPVVQTDSAGTHRDGAGLDRL
YFDGQILVLTGWTSGDATLGLYSEKEPLAPLLRVEVPRPDVATAYAFSSPVTGYLLLWRGPFPEGAKVHARAGGRKQKSV
ALQDFAAADLEPDLSRILREYAPARGVLFDALRDLPDLLRTVAWSATPSHRPGDPRGYIDILKTVPDAGGLCVGWSLGRA
DFFVVDDRGACLDLAGALRWNRPDIFEGFSADYGADCAEAGFLQALPPTARGGSVVRLLARAGDDLILLHERTSEPAPLD
AVGYARWAFSLPVPPERMVERFAAHDGPLLQRLIARMRQHPRNQPLVRRIGPVAAEPEVSLLIPLFGRYDFVDHQLLEFA
DDAFIRERCEVLYIVDDPNIAQPVQSAMERWWQLYRVPLTVVWGGRNRGFSGANNLGLSVARGRQILFLNSDVIPTAPGW
LDALSARLDDNPEYALLGTRLLFPSGGVQHDGMTFEYSPAYGVYLNQHPGKGLAAGPAPAGAILDQAAATGACLIGHRAE
LLELGGFCEDYLIGDFEDSHLCLTAEAAGRRVGVCPDIALTHLERQSLGLFGSGDFRVRVMLFNAWLHQERWREALDRHA
MHGMAGERL

Sequences:

>Translated_649_residues
MSWFTNRSRPQQAQGGSAAEPEPPEPHEVQEPAADPAPPAQAPEEKEVIWQRPVEGPVWPPVVQTDSAGTHRDGAGLDRL
YFDGQILVLTGWTSGDATLGLYSEKEPLAPLLRVEVPRPDVATAYAFSSPVTGYLLLWRGPFPEGAKVHARAGGRKQKSV
ALQDFAAADLEPDLSRILREYAPARGVLFDALRDLPDLLRTVAWSATPSHRPGDPRGYIDILKTVPDAGGLCVGWSLGRA
DFFVVDDRGACLDLAGALRWNRPDIFEGFSADYGADCAEAGFLQALPPTARGGSVVRLLARAGDDLILLHERTSEPAPLD
AVGYARWAFSLPVPPERMVERFAAHDGPLLQRLIARMRQHPRNQPLVRRIGPVAAEPEVSLLIPLFGRYDFVDHQLLEFA
DDAFIRERCEVLYIVDDPNIAQPVQSAMERWWQLYRVPLTVVWGGRNRGFSGANNLGLSVARGRQILFLNSDVIPTAPGW
LDALSARLDDNPEYALLGTRLLFPSGGVQHDGMTFEYSPAYGVYLNQHPGKGLAAGPAPAGAILDQAAATGACLIGHRAE
LLELGGFCEDYLIGDFEDSHLCLTAEAAGRRVGVCPDIALTHLERQSLGLFGSGDFRVRVMLFNAWLHQERWREALDRHA
MHGMAGERL
>Mature_648_residues
SWFTNRSRPQQAQGGSAAEPEPPEPHEVQEPAADPAPPAQAPEEKEVIWQRPVEGPVWPPVVQTDSAGTHRDGAGLDRLY
FDGQILVLTGWTSGDATLGLYSEKEPLAPLLRVEVPRPDVATAYAFSSPVTGYLLLWRGPFPEGAKVHARAGGRKQKSVA
LQDFAAADLEPDLSRILREYAPARGVLFDALRDLPDLLRTVAWSATPSHRPGDPRGYIDILKTVPDAGGLCVGWSLGRAD
FFVVDDRGACLDLAGALRWNRPDIFEGFSADYGADCAEAGFLQALPPTARGGSVVRLLARAGDDLILLHERTSEPAPLDA
VGYARWAFSLPVPPERMVERFAAHDGPLLQRLIARMRQHPRNQPLVRRIGPVAAEPEVSLLIPLFGRYDFVDHQLLEFAD
DAFIRERCEVLYIVDDPNIAQPVQSAMERWWQLYRVPLTVVWGGRNRGFSGANNLGLSVARGRQILFLNSDVIPTAPGWL
DALSARLDDNPEYALLGTRLLFPSGGVQHDGMTFEYSPAYGVYLNQHPGKGLAAGPAPAGAILDQAAATGACLIGHRAEL
LELGGFCEDYLIGDFEDSHLCLTAEAAGRRVGVCPDIALTHLERQSLGLFGSGDFRVRVMLFNAWLHQERWREALDRHAM
HGMAGERL

Specific function: Involved in O-antigen biosynthesis [H]

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 71034; Mature: 70903

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWFTNRSRPQQAQGGSAAEPEPPEPHEVQEPAADPAPPAQAPEEKEVIWQRPVEGPVWP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
PVVQTDSAGTHRDGAGLDRLYFDGQILVLTGWTSGDATLGLYSEKEPLAPLLRVEVPRPD
CEEECCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCCCC
VATAYAFSSPVTGYLLLWRGPFPEGAKVHARAGGRKQKSVALQDFAAADLEPDLSRILRE
CCEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
YAPARGVLFDALRDLPDLLRTVAWSATPSHRPGDPRGYIDILKTVPDAGGLCVGWSLGRA
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCC
DFFVVDDRGACLDLAGALRWNRPDIFEGFSADYGADCAEAGFLQALPPTARGGSVVRLLA
EEEEECCCCCEEEHHHHCCCCCCCHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHH
RAGDDLILLHERTSEPAPLDAVGYARWAFSLPVPPERMVERFAAHDGPLLQRLIARMRQH
HCCCCEEEEECCCCCCCCCCHHCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHC
PRNQPLVRRIGPVAAEPEVSLLIPLFGRYDFVDHQLLEFADDAFIRERCEVLYIVDDPNI
CCCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
AQPVQSAMERWWQLYRVPLTVVWGGRNRGFSGANNLGLSVARGRQILFLNSDVIPTAPGW
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCH
LDALSARLDDNPEYALLGTRLLFPSGGVQHDGMTFEYSPAYGVYLNQHPGKGLAAGPAPA
HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCH
GAILDQAAATGACLIGHRAELLELGGFCEDYLIGDFEDSHLCLTAEAAGRRVGVCPDIAL
HHHHHHHHCCCEEEECCHHHHHHHCCCHHHHEECCCCCCEEEEEECCCCCEECCCCHHHH
THLERQSLGLFGSGDFRVRVMLFNAWLHQERWREALDRHAMHGMAGERL
HHHHHHHCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SWFTNRSRPQQAQGGSAAEPEPPEPHEVQEPAADPAPPAQAPEEKEVIWQRPVEGPVWP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
PVVQTDSAGTHRDGAGLDRLYFDGQILVLTGWTSGDATLGLYSEKEPLAPLLRVEVPRPD
CEEECCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCCCC
VATAYAFSSPVTGYLLLWRGPFPEGAKVHARAGGRKQKSVALQDFAAADLEPDLSRILRE
CCEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
YAPARGVLFDALRDLPDLLRTVAWSATPSHRPGDPRGYIDILKTVPDAGGLCVGWSLGRA
HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCC
DFFVVDDRGACLDLAGALRWNRPDIFEGFSADYGADCAEAGFLQALPPTARGGSVVRLLA
EEEEECCCCCEEEHHHHCCCCCCCHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHH
RAGDDLILLHERTSEPAPLDAVGYARWAFSLPVPPERMVERFAAHDGPLLQRLIARMRQH
HCCCCEEEEECCCCCCCCCCHHCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHC
PRNQPLVRRIGPVAAEPEVSLLIPLFGRYDFVDHQLLEFADDAFIRERCEVLYIVDDPNI
CCCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
AQPVQSAMERWWQLYRVPLTVVWGGRNRGFSGANNLGLSVARGRQILFLNSDVIPTAPGW
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCH
LDALSARLDDNPEYALLGTRLLFPSGGVQHDGMTFEYSPAYGVYLNQHPGKGLAAGPAPA
HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCH
GAILDQAAATGACLIGHRAELLELGGFCEDYLIGDFEDSHLCLTAEAAGRRVGVCPDIAL
HHHHHHHHCCCEEEECCHHHHHHHCCCHHHHEECCCCCCEEEEEECCCCCEECCCCHHHH
THLERQSLGLFGSGDFRVRVMLFNAWLHQERWREALDRHAMHGMAGERL
HHHHHHHCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]