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The map label for this gene is yfdE [H]

Identifier: 154247502

GI number: 154247502

Start: 3996879

End: 3998048

Strand: Reverse

Name: yfdE [H]

Synonym: Xaut_3575

Alternate gene names: 154247502

Gene position: 3998048-3996879 (Counterclockwise)

Preceding gene: 154247507

Following gene: 154247500

Centisome position: 75.31

GC content: 74.53

Gene sequence:

>1170_bases
ATGCCTGATACGCCGCCCTCCCCTACCCCCGCCCCGCGCGGTCCGCTCGCAGGCGTGCGCGTCATCGACCTGTCCCGGCT
CGCGCCGGGCCCCTATTGCACCATGCTGCTGGCGGACCTCGGCGCCGAGGTGATCGTGGTGGGCGGCGGGCGCGCCGGGG
TCGCCATCGCGGAATTCTCCCGCGGCAAGCGCCACGTGGCCCTCAACCTCAAGGCCCCGGAAGGCCGCGCCGCGCTCCAC
GCGCTGGTGAAAGCGGCGGACGTGCTGGTGGAGGGCTTCCGCCCCGGCGTGGCCGAGCGCATCGGCGCGGGATATGCGGA
GCTGTCGGCGCTCAATCCCCGCCTCGTCTTTTGCGCCCTCACCGGTTTCGGCCAGGATGGCCCGCGGGCCAAGGAGGCCG
GCCACGACATCACCTATCTCGCCTTGTCCGGCGTGCTCGGCGGCCTCGGCCCCAAAGGAGCGCCGCCGGAGGCGCCGCTG
AACCTGGTGGCGGATTTCGCCGGCGGCAGCCTGATCGCCGCCATCGGCATCCTCGCGGCGGTGATCGAGGCCAGGGCCTC
GGGGCGCGGCCAGTTCATCGATGCCGCCATGATGGACGGCGCCCTCTCCCTCATGGCCATGCACCTGCCCCTCTGGAAGA
CGCCCCACTGGCCGGAGCGCGGCGACGGGCTGCTGGGCGGCGGGGCGCCGTTCTACCGCACCTATGCCTGCGCCGACGGC
GGCTTCATGGCCGTGGGGGCGCTGGAGCGCGGCTTCTTCGAGAGCCTGTGGCGCACGCTCGATCTGGGCGAGGCTCCGGA
CCACATGCGTCGCGACCTGTGGCCGGGGATCGAGCGCCAGCTGGCGGAGACCTTCGCCAGCGCGCCGCGCGACCATTGGA
CCGCCCTGTTCGCAGGCACGGACGCCTGCGTCGCCCCGGTGCTCGCGCCCGACGAGGTCTGGAGCGATCCCCATGTCGCC
GCGCGCCACCCCGGATGCGGCCCCCATCGCGTGCCCGCCGTGCCGCGCCTCTCCCGCACCCCGGCCGAGGCGCGCCCGCT
GGATCTCTCCGACCGCACCGCCGAGGTGCTGCGCGAGATCGGCCTCAGCGATGAGGTGGCCCGCGCCGCCGCAGCGCCGG
ATGAAGGCGAGGGCCGCTCCGGCCTCGCCTGGCCACCGGAGCTGCGGTAG

Upstream 100 bases:

>100_bases
ATAACCGCTGCCCGGACGGCCCCCGCATACTGAGTCCGCCGAAGGCTGCTGCGAGGTCCGAGAGAACGCTCCCCGCAGGT
CCGGGAAAAAGGGAAACGCC

Downstream 100 bases:

>100_bases
GGCGCTCACCCGTCCGCCACCGTCCCTCAGAACGCCGAGTCGGGCTCCATCCGGGGACGGAACGCGGCGCGGCTGTCCTC
GGGCGCCTCATCGCGGGCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPDTPPSPTPAPRGPLAGVRVIDLSRLAPGPYCTMLLADLGAEVIVVGGGRAGVAIAEFSRGKRHVALNLKAPEGRAALH
ALVKAADVLVEGFRPGVAERIGAGYAELSALNPRLVFCALTGFGQDGPRAKEAGHDITYLALSGVLGGLGPKGAPPEAPL
NLVADFAGGSLIAAIGILAAVIEARASGRGQFIDAAMMDGALSLMAMHLPLWKTPHWPERGDGLLGGGAPFYRTYACADG
GFMAVGALERGFFESLWRTLDLGEAPDHMRRDLWPGIERQLAETFASAPRDHWTALFAGTDACVAPVLAPDEVWSDPHVA
ARHPGCGPHRVPAVPRLSRTPAEARPLDLSDRTAEVLREIGLSDEVARAAAAPDEGEGRSGLAWPPELR

Sequences:

>Translated_389_residues
MPDTPPSPTPAPRGPLAGVRVIDLSRLAPGPYCTMLLADLGAEVIVVGGGRAGVAIAEFSRGKRHVALNLKAPEGRAALH
ALVKAADVLVEGFRPGVAERIGAGYAELSALNPRLVFCALTGFGQDGPRAKEAGHDITYLALSGVLGGLGPKGAPPEAPL
NLVADFAGGSLIAAIGILAAVIEARASGRGQFIDAAMMDGALSLMAMHLPLWKTPHWPERGDGLLGGGAPFYRTYACADG
GFMAVGALERGFFESLWRTLDLGEAPDHMRRDLWPGIERQLAETFASAPRDHWTALFAGTDACVAPVLAPDEVWSDPHVA
ARHPGCGPHRVPAVPRLSRTPAEARPLDLSDRTAEVLREIGLSDEVARAAAAPDEGEGRSGLAWPPELR
>Mature_388_residues
PDTPPSPTPAPRGPLAGVRVIDLSRLAPGPYCTMLLADLGAEVIVVGGGRAGVAIAEFSRGKRHVALNLKAPEGRAALHA
LVKAADVLVEGFRPGVAERIGAGYAELSALNPRLVFCALTGFGQDGPRAKEAGHDITYLALSGVLGGLGPKGAPPEAPLN
LVADFAGGSLIAAIGILAAVIEARASGRGQFIDAAMMDGALSLMAMHLPLWKTPHWPERGDGLLGGGAPFYRTYACADGG
FMAVGALERGFFESLWRTLDLGEAPDHMRRDLWPGIERQLAETFASAPRDHWTALFAGTDACVAPVLAPDEVWSDPHVAA
RHPGCGPHRVPAVPRLSRTPAEARPLDLSDRTAEVLREIGLSDEVARAAAAPDEGEGRSGLAWPPELR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=370, Percent_Identity=43.2432432432432, Blast_Score=283, Evalue=2e-76,
Organism=Homo sapiens, GI266456254, Length=370, Percent_Identity=43.2432432432432, Blast_Score=283, Evalue=2e-76,
Organism=Homo sapiens, GI266458393, Length=250, Percent_Identity=49.2, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=49.1935483870968, Blast_Score=221, Evalue=7e-58,
Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=29.3506493506493, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI300863124, Length=329, Percent_Identity=29.1793313069909, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=28.3116883116883, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI42822893, Length=129, Percent_Identity=49.6124031007752, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458395, Length=129, Percent_Identity=49.6124031007752, Blast_Score=122, Evalue=8e-28,
Organism=Homo sapiens, GI13376042, Length=329, Percent_Identity=25.8358662613982, Blast_Score=113, Evalue=3e-25,
Organism=Escherichia coli, GI87082093, Length=336, Percent_Identity=28.2738095238095, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=25.3071253071253, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1786222, Length=395, Percent_Identity=27.3417721518987, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=305, Percent_Identity=37.3770491803279, Blast_Score=201, Evalue=7e-52,
Organism=Caenorhabditis elegans, GI115535051, Length=306, Percent_Identity=37.5816993464052, Blast_Score=197, Evalue=8e-51,
Organism=Drosophila melanogaster, GI24585488, Length=338, Percent_Identity=42.8994082840237, Blast_Score=250, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=31.3471502590674, Blast_Score=147, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40672; Mature: 40541

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTPPSPTPAPRGPLAGVRVIDLSRLAPGPYCTMLLADLGAEVIVVGGGRAGVAIAEFS
CCCCCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCEEEECCCCCCEEHHHHC
RGKRHVALNLKAPEGRAALHALVKAADVLVEGFRPGVAERIGAGYAELSALNPRLVFCAL
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCEEEEEEE
TGFGQDGPRAKEAGHDITYLALSGVLGGLGPKGAPPEAPLNLVADFAGGSLIAAIGILAA
ECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
VIEARASGRGQFIDAAMMDGALSLMAMHLPLWKTPHWPERGDGLLGGGAPFYRTYACADG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCC
GFMAVGALERGFFESLWRTLDLGEAPDHMRRDLWPGIERQLAETFASAPRDHWTALFAGT
CEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHEEEEEECC
DACVAPVLAPDEVWSDPHVAARHPGCGPHRVPAVPRLSRTPAEARPLDLSDRTAEVLREI
HHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
GLSDEVARAAAAPDEGEGRSGLAWPPELR
CCCHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDTPPSPTPAPRGPLAGVRVIDLSRLAPGPYCTMLLADLGAEVIVVGGGRAGVAIAEFS
CCCCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCEEEECCCCCCEEHHHHC
RGKRHVALNLKAPEGRAALHALVKAADVLVEGFRPGVAERIGAGYAELSALNPRLVFCAL
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCEEEEEEE
TGFGQDGPRAKEAGHDITYLALSGVLGGLGPKGAPPEAPLNLVADFAGGSLIAAIGILAA
ECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
VIEARASGRGQFIDAAMMDGALSLMAMHLPLWKTPHWPERGDGLLGGGAPFYRTYACADG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCC
GFMAVGALERGFFESLWRTLDLGEAPDHMRRDLWPGIERQLAETFASAPRDHWTALFAGT
CEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHEEEEEECC
DACVAPVLAPDEVWSDPHVAARHPGCGPHRVPAVPRLSRTPAEARPLDLSDRTAEVLREI
HHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
GLSDEVARAAAAPDEGEGRSGLAWPPELR
CCCHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]