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The map label for this gene is sigK [H]

Identifier: 154247418

GI number: 154247418

Start: 3886053

End: 3886622

Strand: Direct

Name: sigK [H]

Synonym: Xaut_3490

Alternate gene names: 154247418

Gene position: 3886053-3886622 (Clockwise)

Preceding gene: 154247417

Following gene: 154247419

Centisome position: 73.2

GC content: 70.35

Gene sequence:

>570_bases
GTGCGGTCCCCCACCCAGCACGAGTGTTCCGTGACCTCCCACCGCAAGGTCCATGCCCTCGTCGATCGCGTCGCCGCCGG
CGACCTTCACGCCTTCGAGGAGCTCTACCGCCTCACGAGCCCCAAACTATATGGGCTGGTGCTCCGCCTGCTCCGGAGAC
CGGAGCTGGCCGGAGAGGCGCTGAGGCAGGCCTACAGGCGCATCCGGGCAGAAGCCCACACCTTGCGCCCGCAGGAGGAT
CCGGTCTGCTGGATGGCGGCCGTGGCCCGCTCCTGCGCCCTCGACATGGCCTGGAAGCGGCCGGTGGGCGACGCCTTCGA
GCCGTTCGATGCCGCCCAGAGGGGCGAGGACCCGCTCGCCTCCGAACGTCGGAGCCCGGCGTTGATCCGGCTGCTCGCCT
GCCTGGGCAAGCTGCCCGAGGAACGGCGGCGCATGGTGTTGCTCGCCTTCTATGACGGCTGGAACCGCGAGGCGCTGTCC
ATCTATTTCGATGCGCCGGTGGCCGCCATCCGGGCCTGGATGGCGCGCAGCGTGTCCCAGCTCGGCGAGTGCATGGGGCG
GCGCACATGA

Upstream 100 bases:

>100_bases
CGGTAGCTGATGTTGCGGCGCGGCGCGCATTTTTGCGCGCGGCACGCGCATCCTGTGGCATTCAAGGCTTCCATTCCGCA
GTGCCGCTCCGGTAGCTTCT

Downstream 100 bases:

>100_bases
CGGTGCCGGTCCCCGCGGCGCACCTGACCGAGGCCGACCGCACCCTGGCTGCCGAATACGTGCTGGGCACCCTTGATTCG
GAGGAGCGGCGCGGCGTGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRSPTQHECSVTSHRKVHALVDRVAAGDLHAFEELYRLTSPKLYGLVLRLLRRPELAGEALRQAYRRIRAEAHTLRPQED
PVCWMAAVARSCALDMAWKRPVGDAFEPFDAAQRGEDPLASERRSPALIRLLACLGKLPEERRRMVLLAFYDGWNREALS
IYFDAPVAAIRAWMARSVSQLGECMGRRT

Sequences:

>Translated_189_residues
MRSPTQHECSVTSHRKVHALVDRVAAGDLHAFEELYRLTSPKLYGLVLRLLRRPELAGEALRQAYRRIRAEAHTLRPQED
PVCWMAAVARSCALDMAWKRPVGDAFEPFDAAQRGEDPLASERRSPALIRLLACLGKLPEERRRMVLLAFYDGWNREALS
IYFDAPVAAIRAWMARSVSQLGECMGRRT
>Mature_189_residues
MRSPTQHECSVTSHRKVHALVDRVAAGDLHAFEELYRLTSPKLYGLVLRLLRRPELAGEALRQAYRRIRAEAHTLRPQED
PVCWMAAVARSCALDMAWKRPVGDAFEPFDAAQRGEDPLASERRSPALIRLLACLGKLPEERRRMVLLAFYDGWNREALS
IYFDAPVAAIRAWMARSVSQLGECMGRRT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21498; Mature: 21498

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPTQHECSVTSHRKVHALVDRVAAGDLHAFEELYRLTSPKLYGLVLRLLRRPELAGEA
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH
LRQAYRRIRAEAHTLRPQEDPVCWMAAVARSCALDMAWKRPVGDAFEPFDAAQRGEDPLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH
SERRSPALIRLLACLGKLPEERRRMVLLAFYDGWNREALSIYFDAPVAAIRAWMARSVSQ
HCCCCHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
LGECMGRRT
HHHHHCCCC
>Mature Secondary Structure
MRSPTQHECSVTSHRKVHALVDRVAAGDLHAFEELYRLTSPKLYGLVLRLLRRPELAGEA
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH
LRQAYRRIRAEAHTLRPQEDPVCWMAAVARSCALDMAWKRPVGDAFEPFDAAQRGEDPLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH
SERRSPALIRLLACLGKLPEERRRMVLLAFYDGWNREALSIYFDAPVAAIRAWMARSVSQ
HCCCCHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
LGECMGRRT
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA