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The map label for this gene is yciR [C]

Identifier: 154247268

GI number: 154247268

Start: 3715443

End: 3717266

Strand: Reverse

Name: yciR [C]

Synonym: Xaut_3340

Alternate gene names: 154247268

Gene position: 3717266-3715443 (Counterclockwise)

Preceding gene: 154247270

Following gene: 154247266

Centisome position: 70.02

GC content: 70.56

Gene sequence:

>1824_bases
ATGATGCGCCGTGCGATCGGGGCGATGGGAGGCGATCCGCGCTTCACGGTGGCGTGCGGGGCTCCGATCGCGTCGCGCGG
TCCCGTTCTTGCTACGCGCGGCATGGATCTCACACGAGACAAGCCGAGCTGGAACCATGACACAGCCCACGCCCCGCCCC
GGCCGCACCATCGCCTGCCCGACCTGCGATGCCCTCACCACCCTTGCCGCCGGCGAGGACGCCAAGGCCGCCCGCTGCAC
CGCCTGCGGGGGACCGCTTTTCACCGGCCGGCCCATGGCCCTGACCGCCGCGCGCTTCGATGCCCACACCGGCCAGAGCG
ACGTGCCGCTGGTGATCGACTTCTGGGCCGACTGGTGCGGGCCGTGCAAGTCCATGGCTCCGGTGTTCGAGGCGCTGGCC
GCCGAGTTCGAGCCCCATATCCGCTTCGCCAAGGTGGACACCGACGCCGAGCGGGAGCTCGCTTCCTATTTCCGGATCAG
CTCCATCCCCACCCTCAGCTTCATCCATGCCCACCGGGAGGTCGCCCGCGTGGCCGGCGCCATGTTCGCCGGCGATCTGC
GCCGCTGGCTCTACGACGCCCTGTCCCAGACCGAGGAGAAGGAGACCGCAGCGCCGGAGCCCGCGCCGGAAACGCCCTGA
CCCTGGGGCAGGAAGACGGGGTAGACTGGCGCGGGCGCATGAGCGTCGCGCGGTCAGCGGCGCCGTGGGCGATGAATGGC
GGCCAATCGGATCCCGGCAGCTCTCGTGTTGCCATTTCCGGCGTTGCCAATATCCTGCCGCTCCGCCCGAGTTGTGACAT
GGTTGAACCCGACATCCTTTTCACCCGCATCCTTGAGTTCATGCAGGGCGGGGCGCTCGCCCTCGACCGGCGGGGGCACG
TGCGGGCGTTCAATCCGGCGGCGGAGCGCATGCTCGGCCTGTCGCCGGCGCGGGCCGGCGAGCAGCCGTTCGCGACCATG
CTGTTCGACGATCCGGCCAACGACGATTTCGCGCAGGCGTTGCTCGACGCGGTCTACGACGCCGGCACCAGCCACAGCCG
CGACATCGCCTATTATCGCGACGGCCAGCTCGCCTGGCTCAACATGATCACCTCGACCCTGTGGTCGCATCGCACCGAGG
CCGAGCCCGCCCGCAAGGTGGGGGTGGTGGCGCTGTTCATCGATATCACCGAGCGCAAGGTCGCCACGGAAGAGCTGCGG
CGCGCCAACGAGGAACTGGAGCGCCGGGTGCAGGAGCGCACCCGGCAGCTGGCCGAGGCCAATCTGAAGCTGCAGAGCGA
GATTGCCGAGCGCGTGCGGGCGCAGGAGCGGATCGCCAACCTCGCGGAGCACGACGTGCTCACCGCGCTGCCCAACCGGC
GGCGCTTCGAGCGGCGCCTCGCCGCCGCGGTCGAGCAGGGCGAGCCGTTCGCCGTGCTCTATCTCGATCTCGACGGGTTC
AAGGCCATCAACGACACCCACGGGCACGACACCGGCGACGGCCTGTTGCAGAACGTGGCCGAGCGGCTGCGGGCCTGCCT
GCGCGAGGACGACACGCTGGCGCGGCTCGGCGGCGACGAGTTCGCCGTCATCCTGGCATCCGCCCGCACGGCGGATGAGG
TCCGGCCGGTTGCGGAACGGATCATCGACCATGTGGGCGCGCCCTATGGTGCCGATGGCGATCCCGAGCTGAAGATCAGC
GTCAGCGTCGGCATCGCGCTCTACCCGCAGGCCGGGCGCACCCCGCGCGCGCTGCTCCAGGCGGCGGACCGGGCCATGTA
CGAAGCCAAGCGCGGCAGCCGCCAGCCGGTCCGCCCGCCGGCACCCGACAGCAAGGAGGTCTAG

Upstream 100 bases:

>100_bases
CAGCGCGAATGCCGGCGTAGGCCGTTGACGGTTCCCATGAGCTTCCCCCGCCGCATTTGTATTTTGTGCGACCATAGCAG
CACTTGCGGCCGCGGATGCA

Downstream 100 bases:

>100_bases
GCGCATCCGCCGCACGCCAACCGGCCGGCCACGAGCCACGGCGCGGGACACGGCGCGGCGGAACACCGGACCGGTGATCG
ACAAGAGGATTTTCGCCCGC

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MMRRAIGAMGGDPRFTVACGAPIASRGPVLATRGMDLTRDKPSWNHDTAHAPPRPHHRLPDLRCPHHPCRRRGRQGRPLH
RLRGTAFHRPAHGPDRRALRCPHRPERRAAGDRLLGRLVRAVQVHGSGVRGAGRRVRAPYPLRQGGHRRRAGARFLFPDQ
LHPHPQLHPCPPGGRPRGRRHVRRRSAPLALRRPVPDRGEGDRSAGARAGNALTLGQEDGVDWRGRMSVARSAAPWAMNG
GQSDPGSSRVAISGVANILPLRPSCDMVEPDILFTRILEFMQGGALALDRRGHVRAFNPAAERMLGLSPARAGEQPFATM
LFDDPANDDFAQALLDAVYDAGTSHSRDIAYYRDGQLAWLNMITSTLWSHRTEAEPARKVGVVALFIDITERKVATEELR
RANEELERRVQERTRQLAEANLKLQSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGF
KAINDTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAERIIDHVGAPYGADGDPELKIS
VSVGIALYPQAGRTPRALLQAADRAMYEAKRGSRQPVRPPAPDSKEV

Sequences:

>Translated_607_residues
MMRRAIGAMGGDPRFTVACGAPIASRGPVLATRGMDLTRDKPSWNHDTAHAPPRPHHRLPDLRCPHHPCRRRGRQGRPLH
RLRGTAFHRPAHGPDRRALRCPHRPERRAAGDRLLGRLVRAVQVHGSGVRGAGRRVRAPYPLRQGGHRRRAGARFLFPDQ
LHPHPQLHPCPPGGRPRGRRHVRRRSAPLALRRPVPDRGEGDRSAGARAGNALTLGQEDGVDWRGRMSVARSAAPWAMNG
GQSDPGSSRVAISGVANILPLRPSCDMVEPDILFTRILEFMQGGALALDRRGHVRAFNPAAERMLGLSPARAGEQPFATM
LFDDPANDDFAQALLDAVYDAGTSHSRDIAYYRDGQLAWLNMITSTLWSHRTEAEPARKVGVVALFIDITERKVATEELR
RANEELERRVQERTRQLAEANLKLQSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGF
KAINDTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAERIIDHVGAPYGADGDPELKIS
VSVGIALYPQAGRTPRALLQAADRAMYEAKRGSRQPVRPPAPDSKEV
>Mature_607_residues
MMRRAIGAMGGDPRFTVACGAPIASRGPVLATRGMDLTRDKPSWNHDTAHAPPRPHHRLPDLRCPHHPCRRRGRQGRPLH
RLRGTAFHRPAHGPDRRALRCPHRPERRAAGDRLLGRLVRAVQVHGSGVRGAGRRVRAPYPLRQGGHRRRAGARFLFPDQ
LHPHPQLHPCPPGGRPRGRRHVRRRSAPLALRRPVPDRGEGDRSAGARAGNALTLGQEDGVDWRGRMSVARSAAPWAMNG
GQSDPGSSRVAISGVANILPLRPSCDMVEPDILFTRILEFMQGGALALDRRGHVRAFNPAAERMLGLSPARAGEQPFATM
LFDDPANDDFAQALLDAVYDAGTSHSRDIAYYRDGQLAWLNMITSTLWSHRTEAEPARKVGVVALFIDITERKVATEELR
RANEELERRVQERTRQLAEANLKLQSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGF
KAINDTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAERIIDHVGAPYGADGDPELKIS
VSVGIALYPQAGRTPRALLQAADRAMYEAKRGSRQPVRPPAPDSKEV

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=39.8907103825137, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=40.3726708074534, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.9756097560976, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788956, Length=201, Percent_Identity=32.3383084577114, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=33.1460674157303, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=34.0540540540541, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=229, Percent_Identity=30.1310043668122, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=39.5061728395062, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788085, Length=157, Percent_Identity=31.2101910828025, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=27.7173913043478, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=154, Percent_Identity=29.8701298701299, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=171, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67076; Mature: 67076

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRAIGAMGGDPRFTVACGAPIASRGPVLATRGMDLTRDKPSWNHDTAHAPPRPHHRLP
CCHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
DLRCPHHPCRRRGRQGRPLHRLRGTAFHRPAHGPDRRALRCPHRPERRAAGDRLLGRLVR
CCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AVQVHGSGVRGAGRRVRAPYPLRQGGHRRRAGARFLFPDQLHPHPQLHPCPPGGRPRGRR
HHHHCCCCCCCCCCCCCCCCCHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHH
HVRRRSAPLALRRPVPDRGEGDRSAGARAGNALTLGQEDGVDWRGRMSVARSAAPWAMNG
HHHHHCCCCEEECCCCCCCCCCCHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCC
GQSDPGSSRVAISGVANILPLRPSCDMVEPDILFTRILEFMQGGALALDRRGHVRAFNPA
CCCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEECHH
AERMLGLSPARAGEQPFATMLFDDPANDDFAQALLDAVYDAGTSHSRDIAYYRDGQLAWL
HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
NMITSTLWSHRTEAEPARKVGVVALFIDITERKVATEELRRANEELERRVQERTRQLAEA
HHHHHHHHHCCCCCCHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLKLQSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC
KAINDTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAER
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
IIDHVGAPYGADGDPELKISVSVGIALYPQAGRTPRALLQAADRAMYEAKRGSRQPVRPP
HHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
APDSKEV
CCCCCCC
>Mature Secondary Structure
MMRRAIGAMGGDPRFTVACGAPIASRGPVLATRGMDLTRDKPSWNHDTAHAPPRPHHRLP
CCHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
DLRCPHHPCRRRGRQGRPLHRLRGTAFHRPAHGPDRRALRCPHRPERRAAGDRLLGRLVR
CCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AVQVHGSGVRGAGRRVRAPYPLRQGGHRRRAGARFLFPDQLHPHPQLHPCPPGGRPRGRR
HHHHCCCCCCCCCCCCCCCCCHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHH
HVRRRSAPLALRRPVPDRGEGDRSAGARAGNALTLGQEDGVDWRGRMSVARSAAPWAMNG
HHHHHCCCCEEECCCCCCCCCCCHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCC
GQSDPGSSRVAISGVANILPLRPSCDMVEPDILFTRILEFMQGGALALDRRGHVRAFNPA
CCCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEECHH
AERMLGLSPARAGEQPFATMLFDDPANDDFAQALLDAVYDAGTSHSRDIAYYRDGQLAWL
HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
NMITSTLWSHRTEAEPARKVGVVALFIDITERKVATEELRRANEELERRVQERTRQLAEA
HHHHHHHHHCCCCCCHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLKLQSEIAERVRAQERIANLAEHDVLTALPNRRRFERRLAAAVEQGEPFAVLYLDLDGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC
KAINDTHGHDTGDGLLQNVAERLRACLREDDTLARLGGDEFAVILASARTADEVRPVAER
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
IIDHVGAPYGADGDPELKISVSVGIALYPQAGRTPRALLQAADRAMYEAKRGSRQPVRPP
HHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
APDSKEV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]