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The map label for this gene is ycjZ [C]

Identifier: 154247265

GI number: 154247265

Start: 3711515

End: 3712423

Strand: Direct

Name: ycjZ [C]

Synonym: Xaut_3337

Alternate gene names: 154247265

Gene position: 3711515-3712423 (Clockwise)

Preceding gene: 154247262

Following gene: 154247267

Centisome position: 69.91

GC content: 70.08

Gene sequence:

>909_bases
ATGCAGCGCGAGGATCTGGCCGACCTCAATGCCTTCCTCGCGGTGGCCGAGGAGCGCAGCTTCACCCGCGCCGCCGCAAG
GCTGGGCACCTCCCAGTCGGCGCTGAGCCACACCATCCGCCGGCTTGAGGCGCGGGTGGGGGTGCGGCTCTTGACCCGGA
CCACCCGCAATGTGGCGCCCACGCAGGCGGGCGAGCGGCTGCTCGGGACGCTCCGGCCGGCGCTGGAGAGCATCGGTTCC
GAGCTGACCGCGCTGGCCGAGCTGCGGTCGAGGCCGGCGGGCACCATCCGCATCACCACCGCCGAACATGCCGCCCGCAC
CGTGATCTGGCCGGCGCTGGAACGCCTGCTGCCGGACCATCCGGACATCCATGTGGAGCTGAGCATCGATTCCAGCTTCA
CCGATATCGTGGCCGGACGTTTCGATGCCGGCGTGCGGCTGGGAGAGGCACTGGCCAAGGACATGGTGGCGGTACGCATC
GGGCCGGACCTGCGCATGGCCGTGGTCGGGGCGCCGGCCTATTTCGCGGCGCACCCCATCCCCAGGACGCCGCAGGACCT
CGCCGAGCACAATTGCATCAACCTGCGCCTCCTCAGCTCCGGCGCGCTCTATGCCTGGGAGCTGGAGCGGGACGGACGCG
AAATCCGCGTGCGGGTCGAGGGGCAGCTCGCCTTCGACAATATCGCCATGATCGTCCGCGCTGCCACGGCGGGCTTCGGT
CTGGGCTTCGTTATGGAAGACCAGGTCGCGGCCGAGATCGCCGACGGGCGGCTGGTGCGGGTGCTTGAGGACTGGTGCCC
GGCCTTTGCGGGCTACCACCTTTATTTTCCCAGCCGCCGCCAGCCCTCTGCCGCGTTCGCGGTGCTGGTGGAGGCGTTGC
GCTACCGTCCTGCGGACGGCGCCAGATAG

Upstream 100 bases:

>100_bases
GGCTCGGGAACGGGTGCCCGGTGCGTCCGTGAAAATAGGGCGTGGTCGATCCATGGATTAGACGGTAAGATCGGCATGAA
CTCATGTTCTGGATTCATGA

Downstream 100 bases:

>100_bases
CGCCGGCCGCAGGGGCGTCACTCCAGTCGCACGCGCAGCAGCCGCAAAGCGTTCAGGGTCACCAGCACGGTGGCGCCGGT
GTCGGCGAGGATCGCCGGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQREDLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAGERLLGTLRPALESIGS
ELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIHVELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRI
GPDLRMAVVGAPAYFAAHPIPRTPQDLAEHNCINLRLLSSGALYAWELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG
LGFVMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPADGAR

Sequences:

>Translated_302_residues
MQREDLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAGERLLGTLRPALESIGS
ELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIHVELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRI
GPDLRMAVVGAPAYFAAHPIPRTPQDLAEHNCINLRLLSSGALYAWELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG
LGFVMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPADGAR
>Mature_302_residues
MQREDLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAGERLLGTLRPALESIGS
ELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIHVELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRI
GPDLRMAVVGAPAYFAAHPIPRTPQDLAEHNCINLRLLSSGALYAWELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG
LGFVMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPADGAR

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=52.6845637583893, Blast_Score=331, Evalue=4e-92,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=37.6712328767123, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=26.4604810996564, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.0276816608997, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786401, Length=257, Percent_Identity=26.0700389105058, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789639, Length=273, Percent_Identity=28.2051282051282, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=27.972027972028, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=27.8350515463918, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788748, Length=140, Percent_Identity=35, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=185, Percent_Identity=31.8918918918919, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=265, Percent_Identity=27.1698113207547, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=37.3983739837398, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=22.680412371134, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790011, Length=302, Percent_Identity=24.8344370860927, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=36.9747899159664, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=25.8278145695364, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33035; Mature: 33035

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREDLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TQAGERLLGTLRPALESIGSELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
PDIHVELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRIGPDLRMAVVGAPAYFAAHPI
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEECCHHHHCCCC
PRTPQDLAEHNCINLRLLSSGALYAWELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG
CCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEEECEEEHHHHHHHHHHHHCCCC
LGFVMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPADG
CCEEECHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
AR
CC
>Mature Secondary Structure
MQREDLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TQAGERLLGTLRPALESIGSELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
PDIHVELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRIGPDLRMAVVGAPAYFAAHPI
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEECCHHHHCCCC
PRTPQDLAEHNCINLRLLSSGALYAWELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG
CCCHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEEECEEEHHHHHHHHHHHHCCCC
LGFVMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPADG
CCEEECHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]