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The map label for this gene is yciR [C]

Identifier: 154247068

GI number: 154247068

Start: 3484414

End: 3486708

Strand: Reverse

Name: yciR [C]

Synonym: Xaut_3139

Alternate gene names: 154247068

Gene position: 3486708-3484414 (Counterclockwise)

Preceding gene: 154247071

Following gene: 154247067

Centisome position: 65.68

GC content: 70.41

Gene sequence:

>2295_bases
ATGGACGCGCCAGGGGGCGAACAACGAACACCGGGCCGGCCGGGCCGGCGCAATCCGGTGCCGCTGGTCATTCTCGCGGC
GCTGCTGATCCTGAGCATCGTCGTCGCCACCGGCCTTTTCGTCCGGTCAGCGCGGCGCGACGGCATCAACGACCGCCGCC
GCGAGCTGGCCAACCTCGCCCTGACCCTGGCGGAGCAGACCGCGCGGGTGTTCCAGGGCCTGGAATTCATCCAGGACGAC
CTGATCGGCCACATGCGTGAGCAGGGGATCGAAAGCCCCGGCCAGCTGCGCGCGATGATGGGCACGCAGGCCGTGCACAT
CCTGCTGCGGGCGCGGATCTCCGCATTGGTCCAAGTGGGCTGGTTCTCCATTGTCGACGACACTGGGCAGCTTGTGAACT
CGTCGCGGGCATGGCCGGCCCCGGACGTCAACATTTCAGATCGCCCCGTCTTCCGGGAGCTTTCCGCCCCGCACGGGCCG
CGCCATTTCGTCGGGGAGCCGGCGGCCAGCCCCAGGACGACCAGCATATCAATCACCCTCGCCACCCGCTTCACCACCAG
CGACGGTCGCTTCCTCGGCCTGGTGCAGGGCGCGCTGGAGCAGTCATACCTGGAGCGCTTCTACGAGGCCATCCGGCTCG
GCCGCGACGGCATGATCGCCCTAGTGCGCACCGACGGGACGCTGCTCGCGCGGCACCCCGGCAGCGCCGGTCTCGCCGAT
CGCGACCCGGCGCTGCGGGCGCGGACCATCGGCGCCGTCCTTGCCGCCGCAACGGATGGCGTTCTGCCCGCCGGCGCCCT
CGACGAAAAGGGACGCATCGCCGCGCTCCAGCCCCTGCCCAACCTGCCGCTGGCCATCGTGGTCAGCGACAGCCGCTCGG
CCATCGAAACCGTGCTGTGGCAGCGCGCCATGCCGCTGATCATCGCCTCGGGGCTGCTGTGCTGCGCCATCGCCCTCATC
ACCTACGGCGTCGCGCGGCTGATCAGGGGCGAGCGCGCCTTTGCAGCAGCCGAGCACGCCCTGGCGCGGGTCGACCCTCT
GACCGGCCTTGCCAACCGGCTCGCCTTCACCGAGAGCCTCGAAGCCCTGCTCGCGATGCCCGGCGCCACGCCGCGCTTCT
CCCTGCACTGCGTCGATCTCGACGACTTCAAGGCCGTGAACGACACGCTTGGCCACGAGGCTGGCGACCTGCTCCTGACC
AGGTTCGCCCAACGCATCATTGGCCGGCTGGCGCCGGGAGACACCGCCGCCCGGCTCGGGGGCGACGAATTCGGCATCCT
GCGGCTCGGCAGCAGCGGTGACCGGGAGGCTCTGGCGTTTGCCCAGGGCATCATCGATGCCTTTCAGGAACCGTTCGACA
TCGGCCACCACCGGGTCACCGGTGGATGCAGCATCGGCGTTGCCCTGTCCCCGGTGGACGGGACCACGGCGACGCAACTG
CTGCACAATGCGGACCTCGCGCTCTACCGCGCCAAGAGCGACGGGCGCTGCATCGCGCGGGCGTTCGCGGCGGAGATGGA
AGCGAGCGCCAGCGCGCGCCGCACTCTGGAGGCCGACCTGCACGCCGCCTGGCGGGAGCGGCATTTCGTCCTCGCCTACC
AACCCATCTTCGAGGCCGCCAGCGGCCGGCTGGCCGGCTTCGAGGCGCTCGCGCGCTGGCCCCATTCCGAGCGCGGACTG
GTCCCGCCGGAAACCTTCATCTCCGTCGCCGAGGAGACCGGCCTCATCGTGCCGCTCGGCGCCTGGGTGCTGCGGGAGGC
CTGCCGGGTGGCCGCGGAATGGCCGCCGAACCTGTTCGTGTCGGTGAACCTCTCGCCCCTCCAGTTCCTTGGCGCCCAGA
CCCATCAGCAGGTGCGCGCGGCCCTCGAGGAATCCGGCCTCCCGGCCCGGCGCCTCGAGCTGGAGATCACCGAATCGAGC
CTGCTCAAGCAGGGGCCCACGGTGCGGACTACCCTTGAGCAGCTCGCCGACGAGGGAATCACCGTCGCCCTCGACGATTT
CGGCACCGGCTATTCCTCCCTCGCCTATCTGCGCACGCTCAACATCGGCCGCATCAAGGTGGACCGCTCGTTCGTGCATG
ACGTCGCGCAAAGCCCCCACAGCCTCGCCATCGTGCGGGCCATCGTCGGCCTTGCGCGCACCCTGTCCCTGAGCTGCACG
GCCGAAGGCATTGAAACCGAGGCCCAGCGCCGCATCCTGGCGGACGAAGGCTGCACCCACCTCCAGGGCTTTTTCCTGGG
CCGCCCGACCACCGCCGAGGCCGCCCTCGCCATGGCCCGTTCCGCCGCAGCCTGA

Upstream 100 bases:

>100_bases
CGCGCTGTCGGTTTAGGCCGGTTTCAAGCCATGTTGAAAAACCCTGAAATCGTGCGTTAATGCTGCAGTGCAGCGCAGGG
CGAGCGGGGGCGTAGCCAGC

Downstream 100 bases:

>100_bases
CAAAATCGCGCCACATTCCCTTTTCGGGACGGCCTGGCATGGGTATGGTCTGCGGATGGATCCGATCTCCTCGACCGAGG
CGCTGGCAGCGGCCTGCGAA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 764

Protein sequence:

>764_residues
MDAPGGEQRTPGRPGRRNPVPLVILAALLILSIVVATGLFVRSARRDGINDRRRELANLALTLAEQTARVFQGLEFIQDD
LIGHMREQGIESPGQLRAMMGTQAVHILLRARISALVQVGWFSIVDDTGQLVNSSRAWPAPDVNISDRPVFRELSAPHGP
RHFVGEPAASPRTTSISITLATRFTTSDGRFLGLVQGALEQSYLERFYEAIRLGRDGMIALVRTDGTLLARHPGSAGLAD
RDPALRARTIGAVLAAATDGVLPAGALDEKGRIAALQPLPNLPLAIVVSDSRSAIETVLWQRAMPLIIASGLLCCAIALI
TYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTESLEALLAMPGATPRFSLHCVDLDDFKAVNDTLGHEAGDLLLT
RFAQRIIGRLAPGDTAARLGGDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTTATQL
LHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPIFEAASGRLAGFEALARWPHSERGL
VPPETFISVAEETGLIVPLGAWVLREACRVAAEWPPNLFVSVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESS
LLKQGPTVRTTLEQLADEGITVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGLARTLSLSCT
AEGIETEAQRRILADEGCTHLQGFFLGRPTTAEAALAMARSAAA

Sequences:

>Translated_764_residues
MDAPGGEQRTPGRPGRRNPVPLVILAALLILSIVVATGLFVRSARRDGINDRRRELANLALTLAEQTARVFQGLEFIQDD
LIGHMREQGIESPGQLRAMMGTQAVHILLRARISALVQVGWFSIVDDTGQLVNSSRAWPAPDVNISDRPVFRELSAPHGP
RHFVGEPAASPRTTSISITLATRFTTSDGRFLGLVQGALEQSYLERFYEAIRLGRDGMIALVRTDGTLLARHPGSAGLAD
RDPALRARTIGAVLAAATDGVLPAGALDEKGRIAALQPLPNLPLAIVVSDSRSAIETVLWQRAMPLIIASGLLCCAIALI
TYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTESLEALLAMPGATPRFSLHCVDLDDFKAVNDTLGHEAGDLLLT
RFAQRIIGRLAPGDTAARLGGDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTTATQL
LHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPIFEAASGRLAGFEALARWPHSERGL
VPPETFISVAEETGLIVPLGAWVLREACRVAAEWPPNLFVSVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESS
LLKQGPTVRTTLEQLADEGITVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGLARTLSLSCT
AEGIETEAQRRILADEGCTHLQGFFLGRPTTAEAALAMARSAAA
>Mature_764_residues
MDAPGGEQRTPGRPGRRNPVPLVILAALLILSIVVATGLFVRSARRDGINDRRRELANLALTLAEQTARVFQGLEFIQDD
LIGHMREQGIESPGQLRAMMGTQAVHILLRARISALVQVGWFSIVDDTGQLVNSSRAWPAPDVNISDRPVFRELSAPHGP
RHFVGEPAASPRTTSISITLATRFTTSDGRFLGLVQGALEQSYLERFYEAIRLGRDGMIALVRTDGTLLARHPGSAGLAD
RDPALRARTIGAVLAAATDGVLPAGALDEKGRIAALQPLPNLPLAIVVSDSRSAIETVLWQRAMPLIIASGLLCCAIALI
TYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTESLEALLAMPGATPRFSLHCVDLDDFKAVNDTLGHEAGDLLLT
RFAQRIIGRLAPGDTAARLGGDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTTATQL
LHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPIFEAASGRLAGFEALARWPHSERGL
VPPETFISVAEETGLIVPLGAWVLREACRVAAEWPPNLFVSVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESS
LLKQGPTVRTTLEQLADEGITVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGLARTLSLSCT
AEGIETEAQRRILADEGCTHLQGFFLGRPTTAEAALAMARSAAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=38.2775119617225, Blast_Score=258, Evalue=9e-70,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=33.0935251798561, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=31.6425120772947, Blast_Score=177, Evalue=3e-45,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=35.0194552529183, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI1786507, Length=228, Percent_Identity=35.0877192982456, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787055, Length=422, Percent_Identity=25.1184834123223, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=32.0675105485232, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=32.7935222672065, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1788849, Length=451, Percent_Identity=26.1640798226164, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=31.8367346938775, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081980, Length=318, Percent_Identity=27.3584905660377, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788381, Length=393, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=207, Percent_Identity=32.3671497584541, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1788956, Length=149, Percent_Identity=36.241610738255, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=31.3609467455621, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=32.7380952380952, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=208, Percent_Identity=32.6923076923077, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.0987654320988, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=91, Percent_Identity=42.8571428571429, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1786584, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=32.5, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081881, Length=196, Percent_Identity=33.6734693877551, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 81937; Mature: 81937

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAPGGEQRTPGRPGRRNPVPLVILAALLILSIVVATGLFVRSARRDGINDRRRELANLA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LTLAEQTARVFQGLEFIQDDLIGHMREQGIESPGQLRAMMGTQAVHILLRARISALVQVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFSIVDDTGQLVNSSRAWPAPDVNISDRPVFRELSAPHGPRHFVGEPAASPRTTSISITL
HHHEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
ATRFTTSDGRFLGLVQGALEQSYLERFYEAIRLGRDGMIALVRTDGTLLARHPGSAGLAD
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCC
RDPALRARTIGAVLAAATDGVLPAGALDEKGRIAALQPLPNLPLAIVVSDSRSAIETVLW
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCHHHHHHHHH
QRAMPLIIASGLLCCAIALITYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
EALLAMPGATPRFSLHCVDLDDFKAVNDTLGHEAGDLLLTRFAQRIIGRLAPGDTAARLG
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC
GDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTTATQL
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHCCCEEECCCCEECEEEECCCCCHHHHH
LHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPIFEAA
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC
SGRLAGFEALARWPHSERGLVPPETFISVAEETGLIVPLGAWVLREACRVAAEWPPNLFV
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCEEE
SVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESSLLKQGPTVRTTLEQLADEGI
EECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCHHHHHHHHHHCCCC
TVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGLARTLSLSCT
EEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEC
AEGIETEAQRRILADEGCTHLQGFFLGRPTTAEAALAMARSAAA
CCCHHHHHHHHHHHHCCCHHHHHEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDAPGGEQRTPGRPGRRNPVPLVILAALLILSIVVATGLFVRSARRDGINDRRRELANLA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LTLAEQTARVFQGLEFIQDDLIGHMREQGIESPGQLRAMMGTQAVHILLRARISALVQVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFSIVDDTGQLVNSSRAWPAPDVNISDRPVFRELSAPHGPRHFVGEPAASPRTTSISITL
HHHEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
ATRFTTSDGRFLGLVQGALEQSYLERFYEAIRLGRDGMIALVRTDGTLLARHPGSAGLAD
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCC
RDPALRARTIGAVLAAATDGVLPAGALDEKGRIAALQPLPNLPLAIVVSDSRSAIETVLW
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCHHHHHHHHH
QRAMPLIIASGLLCCAIALITYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
EALLAMPGATPRFSLHCVDLDDFKAVNDTLGHEAGDLLLTRFAQRIIGRLAPGDTAARLG
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC
GDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTTATQL
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHCCCEEECCCCEECEEEECCCCCHHHHH
LHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPIFEAA
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC
SGRLAGFEALARWPHSERGLVPPETFISVAEETGLIVPLGAWVLREACRVAAEWPPNLFV
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCEEE
SVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESSLLKQGPTVRTTLEQLADEGI
EECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCHHHHHHHHHHCCCC
TVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGLARTLSLSCT
EEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEC
AEGIETEAQRRILADEGCTHLQGFFLGRPTTAEAALAMARSAAA
CCCHHHHHHHHHHHHCCCHHHHHEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]