Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 154246991

GI number: 154246991

Start: 3401545

End: 3402294

Strand: Direct

Name: yebC [C]

Synonym: Xaut_3062

Alternate gene names: 154246991

Gene position: 3401545-3402294 (Clockwise)

Preceding gene: 154246990

Following gene: 154246993

Centisome position: 64.07

GC content: 65.87

Gene sequence:

>750_bases
ATGGCCGGGCATTCGCAATTCAAGAACATCATGCACCGCAAGGGGCGGCAGGATGCGATGCGCTCCAAGCTGTTCTCCAA
GCTGGCGCGCGAAATCACCGTCTCGGCCAAGATGGGCCTGCCCGATCCCAACATGAACGCGCGCCTGCGCGCCGCCATTC
TCGCGGCCCGCGCCGAGAACATGCCCAAGGACAATATCGAGCGCGCCATCAAGAAGGCGGCGGGCGCCGACGGCGAGAAC
TATGACGAGATCCGCTATGAGGGCTACGGCCCCGGCGGCGTCGCCGTCATCGTCGAGGCCCTGACCGACAACCGCAACCG
CACCGCCTCTGAAGTGCGCTCCTTCTTCACCAAGTCGGGCGGCAACCTCGCCGAGACGGGGGCGGTGTCCTTCATGTTCG
ACCGGGTGGGCGCCATCGAGTTCGCTGCCGAGAAGGCCGACGCCGACGCCATGATGGAAGCGGCCATCGATGCCGGCGCG
GACGACGTGACCTCCTCGGAGCACGGCCACGAGGTGATCTGCGCGGCGGAGAGCCTTGCGGAAGTGCAGCGCGCGCTGGA
AGCCAAGTTCGGCGAGCCGAAGAAGGCAGCGCTGGTCTGGCGGCCGCAGAACACCGTCGCGGTGGACGACGAGACCGGCG
AGAAGCTGCTGCGCCTTGTTGAAAACCTCGAGGACAACGACGACGTGCAGAACGTCACCGCCAATTTCGAACTGTCCGAC
GCGCTGCTCGCCAAACTGAACGCGGAGTGA

Upstream 100 bases:

>100_bases
CCCCGCCGCGGACCTATAAGGCCGGCTCCAGTCAACAGATCGGTCCGGGCAGCGCTGCAGTGGCGGGGCGCGGGATTGAA
ATTCAAGGAATGGTGGCGGC

Downstream 100 bases:

>100_bases
GAGCGGAGCGCCGCCCGAACGGGTGGCGGCTCGGTTAAGGCGCTGCCGCCTTGATGCACAAACAAAAAGGCACGGACCGA
TCGGTCCGTGCCTTTTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAGHSQFKNIMHRKGRQDAMRSKLFSKLAREITVSAKMGLPDPNMNARLRAAILAARAENMPKDNIERAIKKAAGADGEN
YDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSFFTKSGGNLAETGAVSFMFDRVGAIEFAAEKADADAMMEAAIDAGA
DDVTSSEHGHEVICAAESLAEVQRALEAKFGEPKKAALVWRPQNTVAVDDETGEKLLRLVENLEDNDDVQNVTANFELSD
ALLAKLNAE

Sequences:

>Translated_249_residues
MAGHSQFKNIMHRKGRQDAMRSKLFSKLAREITVSAKMGLPDPNMNARLRAAILAARAENMPKDNIERAIKKAAGADGEN
YDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSFFTKSGGNLAETGAVSFMFDRVGAIEFAAEKADADAMMEAAIDAGA
DDVTSSEHGHEVICAAESLAEVQRALEAKFGEPKKAALVWRPQNTVAVDDETGEKLLRLVENLEDNDDVQNVTANFELSD
ALLAKLNAE
>Mature_248_residues
AGHSQFKNIMHRKGRQDAMRSKLFSKLAREITVSAKMGLPDPNMNARLRAAILAARAENMPKDNIERAIKKAAGADGENY
DEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSFFTKSGGNLAETGAVSFMFDRVGAIEFAAEKADADAMMEAAIDAGAD
DVTSSEHGHEVICAAESLAEVQRALEAKFGEPKKAALVWRPQNTVAVDDETGEKLLRLVENLEDNDDVQNVTANFELSDA
LLAKLNAE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=246, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=2e-29,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=47.1774193548387, Blast_Score=221, Evalue=5e-59,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=38.1974248927039, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17556100, Length=242, Percent_Identity=26.0330578512397, Blast_Score=81, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=34.6007604562738, Blast_Score=126, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=26.2948207171315, Blast_Score=77, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3062_XANP2 (A7IJU9)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001417949.1
- ProteinModelPortal:   A7IJU9
- SMR:   A7IJU9
- STRING:   A7IJU9
- GeneID:   5424449
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_3062
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   XAUT78245:XAUT_3062-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26971; Mature: 26840

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSQFKNIMHRKGRQDAMRSKLFSKLAREITVSAKMGLPDPNMNARLRAAILAARAEN
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
MPKDNIERAIKKAAGADGENYDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSFFTKSG
CCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
GNLAETGAVSFMFDRVGAIEFAAEKADADAMMEAAIDAGADDVTSSEHGHEVICAAESLA
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHH
EVQRALEAKFGEPKKAALVWRPQNTVAVDDETGEKLLRLVENLEDNDDVQNVTANFELSD
HHHHHHHHHCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCCHHHHCCCCCHHH
ALLAKLNAE
HHHHHHCCC
>Mature Secondary Structure 
AGHSQFKNIMHRKGRQDAMRSKLFSKLAREITVSAKMGLPDPNMNARLRAAILAARAEN
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
MPKDNIERAIKKAAGADGENYDEIRYEGYGPGGVAVIVEALTDNRNRTASEVRSFFTKSG
CCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
GNLAETGAVSFMFDRVGAIEFAAEKADADAMMEAAIDAGADDVTSSEHGHEVICAAESLA
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHH
EVQRALEAKFGEPKKAALVWRPQNTVAVDDETGEKLLRLVENLEDNDDVQNVTANFELSD
HHHHHHHHHCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCCHHHHCCCCCHHH
ALLAKLNAE
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA