Click here to switch to the map view.

The map label for this gene is trbF [H]

Identifier: 154246926

GI number: 154246926

Start: 3335500

End: 3336183

Strand: Reverse

Name: trbF [H]

Synonym: Xaut_2997

Alternate gene names: 154246926

Gene position: 3336183-3335500 (Counterclockwise)

Preceding gene: 154246927

Following gene: 154246925

Centisome position: 62.84

GC content: 65.79

Gene sequence:

>684_bases
ATGTTCAAACGACCGGCCACCCATTACGGCAAATCACCCGAGCCTGAGACGCCCTATCAGCGCGCCGCCCAGGTCTGGGA
CGAGCGTATCGGCTCCGCCCGTGTGCAGGCCCGCAACTGGCGCTTCATGGCCTTCGGCTCGCTGGCGCTGTCGATGGGCC
TTGCCGCCGCGCTGGTCTGGCAATCCGCCAATGGCTCGATCGTACCCTGGGTGGTGCAGGTCGACCGGCTCGGCCAGGCG
CAGGCCGTGGCGCCGGCGACGGCCGACTATCAACCGAACGACCCACAGATCGCCTTCTATCTCGCGCGGTTCATCGAGCA
GGTCCGCTCGATCCCGGCCGATGCGATCATCGTGCGCCAGAACTGGCTGCGCGCCTACGACTTCACTACGCAGGGCGGTG
CGCTGGCGCTCAACGACTACGCCCGGTCGAACGATCCCTTCGCCAAGGTCGGCAAACAACAGGTCGCGATCGAGGTGTCG
TCGGTCATCCGCGCCTCGCCATCGAGCTTCCGCATCGCCTGGATCGAGCGCCGCTATCAGGACGGCTCTCTCGCCTCGAC
CGAACGCTGGTCCGCCATCCTCACCGTCGCCGTGCAGACCCCGCGCGACGCCGACACGCTGAAGAAGAACCCGCTCGGAA
TCTACGTCAACGCAATCAACTGGTCGAAGGAGCTTGGACAATGA

Upstream 100 bases:

>100_bases
AGCAGATGACACACGGCGTCCAGGCCGCCGCTCACGCCGTTCGCGGCGGCGATAGCCACGGCGGCGGCTCTTCCGTCAAC
CTTTCCGAAAGCGACTGACC

Downstream 100 bases:

>100_bases
CGCCAGCACTCCACAAAGCCGCCCCCTGGAGTGCAGGGCGTCCGGCTTTCCGTAAATCCGGCTTGCCGCTTCTGCTGCTC
TGCACGTCTGCGCTCTCCGG

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFKRPATHYGKSPEPETPYQRAAQVWDERIGSARVQARNWRFMAFGSLALSMGLAAALVWQSANGSIVPWVVQVDRLGQA
QAVAPATADYQPNDPQIAFYLARFIEQVRSIPADAIIVRQNWLRAYDFTTQGGALALNDYARSNDPFAKVGKQQVAIEVS
SVIRASPSSFRIAWIERRYQDGSLASTERWSAILTVAVQTPRDADTLKKNPLGIYVNAINWSKELGQ

Sequences:

>Translated_227_residues
MFKRPATHYGKSPEPETPYQRAAQVWDERIGSARVQARNWRFMAFGSLALSMGLAAALVWQSANGSIVPWVVQVDRLGQA
QAVAPATADYQPNDPQIAFYLARFIEQVRSIPADAIIVRQNWLRAYDFTTQGGALALNDYARSNDPFAKVGKQQVAIEVS
SVIRASPSSFRIAWIERRYQDGSLASTERWSAILTVAVQTPRDADTLKKNPLGIYVNAINWSKELGQ
>Mature_227_residues
MFKRPATHYGKSPEPETPYQRAAQVWDERIGSARVQARNWRFMAFGSLALSMGLAAALVWQSANGSIVPWVVQVDRLGQA
QAVAPATADYQPNDPQIAFYLARFIEQVRSIPADAIIVRQNWLRAYDFTTQGGALALNDYARSNDPFAKVGKQQVAIEVS
SVIRASPSSFRIAWIERRYQDGSLASTERWSAILTVAVQTPRDADTLKKNPLGIYVNAINWSKELGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25271; Mature: 25271

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRPATHYGKSPEPETPYQRAAQVWDERIGSARVQARNWRFMAFGSLALSMGLAAALVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHEE
QSANGSIVPWVVQVDRLGQAQAVAPATADYQPNDPQIAFYLARFIEQVRSIPADAIIVRQ
ECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
NWLRAYDFTTQGGALALNDYARSNDPFAKVGKQQVAIEVSSVIRASPSSFRIAWIERRYQ
CCCEEEECCCCCCEEEEECCCCCCCCHHHHCCHHEEEEHHHHHHCCCCCEEEEEEEECCC
DGSLASTERWSAILTVAVQTPRDADTLKKNPLGIYVNAINWSKELGQ
CCCCCCHHHCEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHHCC
>Mature Secondary Structure
MFKRPATHYGKSPEPETPYQRAAQVWDERIGSARVQARNWRFMAFGSLALSMGLAAALVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHEE
QSANGSIVPWVVQVDRLGQAQAVAPATADYQPNDPQIAFYLARFIEQVRSIPADAIIVRQ
ECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
NWLRAYDFTTQGGALALNDYARSNDPFAKVGKQQVAIEVSSVIRASPSSFRIAWIERRYQ
CCCEEEECCCCCCEEEEECCCCCCCCHHHHCCHHEEEEHHHHHHCCCCCEEEEEEEECCC
DGSLASTERWSAILTVAVQTPRDADTLKKNPLGIYVNAINWSKELGQ
CCCCCCHHHCEEEEEEEEECCCCHHHHCCCCCEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]