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The map label for this gene is ywqM [H]

Identifier: 154246897

GI number: 154246897

Start: 3288455

End: 3289330

Strand: Direct

Name: ywqM [H]

Synonym: Xaut_2965

Alternate gene names: 154246897

Gene position: 3288455-3289330 (Clockwise)

Preceding gene: 154246896

Following gene: 154246898

Centisome position: 61.94

GC content: 58.79

Gene sequence:

>876_bases
ATGGAACTCAACCAGATTCGATATTTCCTGAACCTGGCAGACACCCTCAACTTCACCGAAGCAGCCATGCGCAGCGGGGT
GTCTCAGCCCACGCTCACCCGCGCGATCCAGCGGCTCGAACAGGAGTTGGGCGGAACGTTGGTCTATCGCGATGGAAAAG
ACAGTCGACTGACAACGCTCGGCCGCGACATACGATCCGAATTCGCTGCGATCGCCGACCGCGAACAGCGGGTTCGGGCA
ATATCCCTCAATCGGGTTCGCGGCCGCCGCGAGACCTTGACGCTGGGTATCGTGAATACCATCGCGCCAGCACTGATTAC
GGAATTTCTGAAACACGCCCTTCGACAGATGCCGATGCTTGAACTGGTTCTTCAGCCGATCACCCGCGACGAGGGGATGG
AGCGCCTGCTCGGCGGTCAAATTGACGGGTGCTTCTGCACGGATCCAGCGGCCGGAAACACCAAGATTGCAACCGTTGAA
ATGTTCCGTGAGCGACTGTTACTGGCGATGGCGCATGGACACAGCCTGGCAAGCCAAGCCTCGGTGTCTCTTGTCGAGCT
ATCGGAACAGCCTTACCTCGATCGCCTCCAGTGCGAATTCCGCACGCGCGTGCAAAACCATTTGAACGAGCGCGCGATTT
TCATGATCCCACGGCTCAGATCCGAACGGGAGGATTTGATTCAACAAGCCGTGGCATCGGGCGCGGGCGTTTGCATGCTG
CCTGAACGTTCGGCAATCGTAGAGGGCTTGACGTTACGCCCGGTCGATACGCTCGACCTGTCGCGCACGGTGGCATTCCA
ATCGATTTCGGGATCTGGAACGGCAACGGCGCTGCGGCAGCTCCGTGTACTGATAGAGCGGTATGTGTGGTCGTGA

Upstream 100 bases:

>100_bases
ACATCGCCGCGTGTATAGTTTCTGTACGGAAGCATCCCTTCGGCCGACGGTGCTTGTCCGGTCTGAAGTCGATGCTTGAG
TAGGCGACGAAGGAAGAACA

Downstream 100 bases:

>100_bases
ATTCCGTGAAGGCGCGGGCCTTTATGGTGCGGCGACCACACAAGCGTTCCCAGTGCATGCCGGTGACAACATCAAAACTA
TAGTTGCGGCGTATTGGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MELNQIRYFLNLADTLNFTEAAMRSGVSQPTLTRAIQRLEQELGGTLVYRDGKDSRLTTLGRDIRSEFAAIADREQRVRA
ISLNRVRGRRETLTLGIVNTIAPALITEFLKHALRQMPMLELVLQPITRDEGMERLLGGQIDGCFCTDPAAGNTKIATVE
MFRERLLLAMAHGHSLASQASVSLVELSEQPYLDRLQCEFRTRVQNHLNERAIFMIPRLRSEREDLIQQAVASGAGVCML
PERSAIVEGLTLRPVDTLDLSRTVAFQSISGSGTATALRQLRVLIERYVWS

Sequences:

>Translated_291_residues
MELNQIRYFLNLADTLNFTEAAMRSGVSQPTLTRAIQRLEQELGGTLVYRDGKDSRLTTLGRDIRSEFAAIADREQRVRA
ISLNRVRGRRETLTLGIVNTIAPALITEFLKHALRQMPMLELVLQPITRDEGMERLLGGQIDGCFCTDPAAGNTKIATVE
MFRERLLLAMAHGHSLASQASVSLVELSEQPYLDRLQCEFRTRVQNHLNERAIFMIPRLRSEREDLIQQAVASGAGVCML
PERSAIVEGLTLRPVDTLDLSRTVAFQSISGSGTATALRQLRVLIERYVWS
>Mature_291_residues
MELNQIRYFLNLADTLNFTEAAMRSGVSQPTLTRAIQRLEQELGGTLVYRDGKDSRLTTLGRDIRSEFAAIADREQRVRA
ISLNRVRGRRETLTLGIVNTIAPALITEFLKHALRQMPMLELVLQPITRDEGMERLLGGQIDGCFCTDPAAGNTKIATVE
MFRERLLLAMAHGHSLASQASVSLVELSEQPYLDRLQCEFRTRVQNHLNERAIFMIPRLRSEREDLIQQAVASGAGVCML
PERSAIVEGLTLRPVDTLDLSRTVAFQSISGSGTATALRQLRVLIERYVWS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=199, Percent_Identity=28.1407035175879, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=22.9965156794425, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790783, Length=249, Percent_Identity=26.5060240963855, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI2367136, Length=195, Percent_Identity=27.1794871794872, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32622; Mature: 32622

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNQIRYFLNLADTLNFTEAAMRSGVSQPTLTRAIQRLEQELGGTLVYRDGKDSRLTTL
CCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
GRDIRSEFAAIADREQRVRAISLNRVRGRRETLTLGIVNTIAPALITEFLKHALRQMPML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHCCHH
ELVLQPITRDEGMERLLGGQIDGCFCTDPAAGNTKIATVEMFRERLLLAMAHGHSLASQA
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHH
SVSLVELSEQPYLDRLQCEFRTRVQNHLNERAIFMIPRLRSEREDLIQQAVASGAGVCML
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEC
PERSAIVEGLTLRPVDTLDLSRTVAFQSISGSGTATALRQLRVLIERYVWS
CCHHHHHCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELNQIRYFLNLADTLNFTEAAMRSGVSQPTLTRAIQRLEQELGGTLVYRDGKDSRLTTL
CCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
GRDIRSEFAAIADREQRVRAISLNRVRGRRETLTLGIVNTIAPALITEFLKHALRQMPML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHCCHH
ELVLQPITRDEGMERLLGGQIDGCFCTDPAAGNTKIATVEMFRERLLLAMAHGHSLASQA
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHH
SVSLVELSEQPYLDRLQCEFRTRVQNHLNERAIFMIPRLRSEREDLIQQAVASGAGVCML
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEC
PERSAIVEGLTLRPVDTLDLSRTVAFQSISGSGTATALRQLRVLIERYVWS
CCHHHHHCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]