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The map label for this gene is yubM [H]

Identifier: 154246797

GI number: 154246797

Start: 3185956

End: 3188085

Strand: Direct

Name: yubM [H]

Synonym: Xaut_2858

Alternate gene names: 154246797

Gene position: 3185956-3188085 (Clockwise)

Preceding gene: 154246796

Following gene: 154246798

Centisome position: 60.01

GC content: 66.67

Gene sequence:

>2130_bases
ATGACCCGAGTTCAGAAGATCGTCCTGTCCTCATCGCGGGATATCCCGTTCAACAAGCTGGTGCTGAGCCAGTCCAATGT
CCGCCGGATCAAGGCCGGCGTCTCAATCGACGAGCTGGCCGAGGACATCGCCCGGCGCACGCTCCTGCAGAGCATCACCG
TGCGGCCGGTTCGCGATGCCGAAGGCGTCGAGACCGGCATGTTCGAGGTGCCGGCCGGCGGCCGCCGCTTCCGCGCGCTC
GAACTTCTGGTCAAGCAGAAGCGCTTGGCCAAGACCGCGCCCGTGCCCTGCGTCGTGCGCGAGAACGGCATTCCCGAGGA
AGACAGCCTCGCCGAAAACGTCCAGCGCGCGCCGCTGCATCCGCTCGATCAGTTCCGGGCGTTCCTGGCGCTGCGTGAGA
AGGGCCAATCCGAGGAGGACATCGCCGCGGCCTTCTTTGTCGCTGTGTCGGTGGTCAAGCAGCGCCTCCGCCTTGCGTCC
GTCTCGCCCAAGCTGCTCGACGTCTATGCCGACGACGGCATGACGCTGGACCAGCTCATGGCGTTCACCGTCAACGGCGA
TCATGAGCGCCAGGAGCAGGTGTTCGAGCGCCTGACCCAGTCGTACTCCAAAGAGCCGCATGTCATCCGCCGGATGCTCA
CCGAGGGGGCCGTGCGGGCGTCTGACAAGCGCGCGCAATTCATCGGCCTCGACGCCTACACCGAGGCGGGCGGCGTGATC
CTGCGCGACCTGTTCCAGGGCGACGACGGCGGCTGGCTGCAGGATGTCGGTCTCCTCGACATGCTGGTGGCCGAGAAGCT
GCGCGAGCAGTCCGAAGCGATCCGCGCCGAAGGCTGGAAGTGGATCGATGTCGCGCCCGACTTTGCCTACGGCCACACCT
ACGGCCTGCGGCAATTGCGCGGCGAGCAGATTCCGCTCACCCACGATGAGCAGGCGACGCGCGATGCGTTGCAAGCCGAG
ATGGACAGTCTGGAGGAGACCTACGCCGAAGCCGAGGAACTGCCCGACGAGGTCGATCAACGACTCGGCGAGATCGAGAC
GGCGCTTGCCGCCTTCGATGAACGCCCCCAGGCCTTCGATCCCGAGGAGGTCGCGCGAGCTGGCGCCTTCATCAGCATCG
ACGGCTCCGGCGCCCTGCGCATCGAGCGCGGCTATGTCCGCCCCGAGGACGAACTTCGGATCGCCCCCGAGTCTGACGCC
GAGACCGATCCGGCCGAAGGGCCGACCATCGCAACACGCGCTGAGCATGACGGTGCGAGCGTGGTCGCGGACCCGGAGAG
TCCTGCCGCTGAGCCCGAAGAAGACGATGGTATCAAGCCGATTCCTGACCGGCTGATGACCGAGCTGACCGCCCATCGGA
CCCTGGCCCTTCGCCATGCGGTGGGCGAGAATCCCGACATCGCCTTCATCGCCGCGCTTCACGCCCTGTGCCTCAAGGTG
TTTTACCGTTACGCGCAGGACACCTGTCTGGAGCTCGACCTGAAGAGTGTCGGTTTCAGCGCTCAGGCGCCGGGCCTTGC
CGACAGTGCGCTTGCCGTCGCTTTCGACGCCCGGCATCAGGCTTGGGTCAGCGCGCTGCCGAAGGAACCGGCCGACCTTT
GGGACGGGCTTGTGACGTTCGACGGCGACAGCCGTCGGGCGCTCTTCGCTCATTGCGTCTCGCTGTCGGTCAACGCGGTC
TATGAGGCCTACAATCGCAAGCCTCGCGCGCTGGCCCACGCCGACCGGATCGCCCATGCCGTCGATCTCGACATGGTTGC
CGCCGGTTGGACGCCGACGATCGAAAACTATTTTGGTCGGGTGACCAAGGCCCGCATCCTCGCAGCCGTGCGGGAGGCGA
AAGGTGAGCGTGCGGGCGACCGCATTGAGCATCTGAAGAAGGCCGAGATGGCCGAACAAGCCCAGACGCTGTTGGCCGGG
TCCGGATGGCTGCCGGAGCCGCTGCGCACACCGGGTCGCGACGTGCTGAGCGCCGTTGAGTCCGACGCCATCGACGCTGC
GGAAGCAGGCGCCGACGCGGCGGGCGAAGAAACGGCGGCGGACGGCGGCGAAACGGCCGTGGTCGAAGACGACGAAGTGA
CCGAGGATGAGTCGGTCGCGCTCGAAGCCCACGCGACCGCGGCCGAATAA

Upstream 100 bases:

>100_bases
CCGCGCAGCCCGAGCCTCCTAGAGGAAGAGGGCTGCGCTCGCTTCGTGACGGGTTGAGGTCGCGAGAGAGTCTCACGGCC
GCCCGTCATGGAGAATGACC

Downstream 100 bases:

>100_bases
CGAAGGAGCCAACCGCACTGCCAGGGGCCCGCCAGCGATGGCGGGCCCTTTTTCGTCTCGGAGGACACGATGTCGGACAA
TGCATCCGATCTGGCGCGCC

Product: nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 708

Protein sequence:

>709_residues
MTRVQKIVLSSSRDIPFNKLVLSQSNVRRIKAGVSIDELAEDIARRTLLQSITVRPVRDAEGVETGMFEVPAGGRRFRAL
ELLVKQKRLAKTAPVPCVVRENGIPEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEDIAAAFFVAVSVVKQRLRLAS
VSPKLLDVYADDGMTLDQLMAFTVNGDHERQEQVFERLTQSYSKEPHVIRRMLTEGAVRASDKRAQFIGLDAYTEAGGVI
LRDLFQGDDGGWLQDVGLLDMLVAEKLREQSEAIRAEGWKWIDVAPDFAYGHTYGLRQLRGEQIPLTHDEQATRDALQAE
MDSLEETYAEAEELPDEVDQRLGEIETALAAFDERPQAFDPEEVARAGAFISIDGSGALRIERGYVRPEDELRIAPESDA
ETDPAEGPTIATRAEHDGASVVADPESPAAEPEEDDGIKPIPDRLMTELTAHRTLALRHAVGENPDIAFIAALHALCLKV
FYRYAQDTCLELDLKSVGFSAQAPGLADSALAVAFDARHQAWVSALPKEPADLWDGLVTFDGDSRRALFAHCVSLSVNAV
YEAYNRKPRALAHADRIAHAVDLDMVAAGWTPTIENYFGRVTKARILAAVREAKGERAGDRIEHLKKAEMAEQAQTLLAG
SGWLPEPLRTPGRDVLSAVESDAIDAAEAGADAAGEETAADGGETAVVEDDEVTEDESVALEAHATAAE

Sequences:

>Translated_709_residues
MTRVQKIVLSSSRDIPFNKLVLSQSNVRRIKAGVSIDELAEDIARRTLLQSITVRPVRDAEGVETGMFEVPAGGRRFRAL
ELLVKQKRLAKTAPVPCVVRENGIPEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEDIAAAFFVAVSVVKQRLRLAS
VSPKLLDVYADDGMTLDQLMAFTVNGDHERQEQVFERLTQSYSKEPHVIRRMLTEGAVRASDKRAQFIGLDAYTEAGGVI
LRDLFQGDDGGWLQDVGLLDMLVAEKLREQSEAIRAEGWKWIDVAPDFAYGHTYGLRQLRGEQIPLTHDEQATRDALQAE
MDSLEETYAEAEELPDEVDQRLGEIETALAAFDERPQAFDPEEVARAGAFISIDGSGALRIERGYVRPEDELRIAPESDA
ETDPAEGPTIATRAEHDGASVVADPESPAAEPEEDDGIKPIPDRLMTELTAHRTLALRHAVGENPDIAFIAALHALCLKV
FYRYAQDTCLELDLKSVGFSAQAPGLADSALAVAFDARHQAWVSALPKEPADLWDGLVTFDGDSRRALFAHCVSLSVNAV
YEAYNRKPRALAHADRIAHAVDLDMVAAGWTPTIENYFGRVTKARILAAVREAKGERAGDRIEHLKKAEMAEQAQTLLAG
SGWLPEPLRTPGRDVLSAVESDAIDAAEAGADAAGEETAADGGETAVVEDDEVTEDESVALEAHATAAE
>Mature_708_residues
TRVQKIVLSSSRDIPFNKLVLSQSNVRRIKAGVSIDELAEDIARRTLLQSITVRPVRDAEGVETGMFEVPAGGRRFRALE
LLVKQKRLAKTAPVPCVVRENGIPEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEDIAAAFFVAVSVVKQRLRLASV
SPKLLDVYADDGMTLDQLMAFTVNGDHERQEQVFERLTQSYSKEPHVIRRMLTEGAVRASDKRAQFIGLDAYTEAGGVIL
RDLFQGDDGGWLQDVGLLDMLVAEKLREQSEAIRAEGWKWIDVAPDFAYGHTYGLRQLRGEQIPLTHDEQATRDALQAEM
DSLEETYAEAEELPDEVDQRLGEIETALAAFDERPQAFDPEEVARAGAFISIDGSGALRIERGYVRPEDELRIAPESDAE
TDPAEGPTIATRAEHDGASVVADPESPAAEPEEDDGIKPIPDRLMTELTAHRTLALRHAVGENPDIAFIAALHALCLKVF
YRYAQDTCLELDLKSVGFSAQAPGLADSALAVAFDARHQAWVSALPKEPADLWDGLVTFDGDSRRALFAHCVSLSVNAVY
EAYNRKPRALAHADRIAHAVDLDMVAAGWTPTIENYFGRVTKARILAAVREAKGERAGDRIEHLKKAEMAEQAQTLLAGS
GWLPEPLRTPGRDVLSAVESDAIDAAEAGADAAGEETAADGGETAVVEDDEVTEDESVALEAHATAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 77514; Mature: 77383

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVQKIVLSSSRDIPFNKLVLSQSNVRRIKAGVSIDELAEDIARRTLLQSITVRPVRDA
CCHHHHHHHHCCCCCCHHHEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EGVETGMFEVPAGGRRFRALELLVKQKRLAKTAPVPCVVRENGIPEEDSLAENVQRAPLH
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC
PLDQFRAFLALREKGQSEEDIAAAFFVAVSVVKQRLRLASVSPKLLDVYADDGMTLDQLM
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCHHHHH
AFTVNGDHERQEQVFERLTQSYSKEPHVIRRMLTEGAVRASDKRAQFIGLDAYTEAGGVI
EEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCHHH
LRDLFQGDDGGWLQDVGLLDMLVAEKLREQSEAIRAEGWKWIDVAPDFAYGHTYGLRQLR
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHC
GEQIPLTHDEQATRDALQAEMDSLEETYAEAEELPDEVDQRLGEIETALAAFDERPQAFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC
PEEVARAGAFISIDGSGALRIERGYVRPEDELRIAPESDAETDPAEGPTIATRAEHDGAS
HHHHHHCCCEEEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCE
VVADPESPAAEPEEDDGIKPIPDRLMTELTAHRTLALRHAVGENPDIAFIAALHALCLKV
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
FYRYAQDTCLELDLKSVGFSAQAPGLADSALAVAFDARHQAWVSALPKEPADLWDGLVTF
HHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEE
DGDSRRALFAHCVSLSVNAVYEAYNRKPRALAHADRIAHAVDLDMVAAGWTPTIENYFGR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VTKARILAAVREAKGERAGDRIEHLKKAEMAEQAQTLLAGSGWLPEPLRTPGRDVLSAVE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
SDAIDAAEAGADAAGEETAADGGETAVVEDDEVTEDESVALEAHATAAE
HHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
TRVQKIVLSSSRDIPFNKLVLSQSNVRRIKAGVSIDELAEDIARRTLLQSITVRPVRDA
CHHHHHHHHCCCCCCHHHEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EGVETGMFEVPAGGRRFRALELLVKQKRLAKTAPVPCVVRENGIPEEDSLAENVQRAPLH
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC
PLDQFRAFLALREKGQSEEDIAAAFFVAVSVVKQRLRLASVSPKLLDVYADDGMTLDQLM
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCHHHHH
AFTVNGDHERQEQVFERLTQSYSKEPHVIRRMLTEGAVRASDKRAQFIGLDAYTEAGGVI
EEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCHHH
LRDLFQGDDGGWLQDVGLLDMLVAEKLREQSEAIRAEGWKWIDVAPDFAYGHTYGLRQLR
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHC
GEQIPLTHDEQATRDALQAEMDSLEETYAEAEELPDEVDQRLGEIETALAAFDERPQAFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC
PEEVARAGAFISIDGSGALRIERGYVRPEDELRIAPESDAETDPAEGPTIATRAEHDGAS
HHHHHHCCCEEEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCE
VVADPESPAAEPEEDDGIKPIPDRLMTELTAHRTLALRHAVGENPDIAFIAALHALCLKV
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
FYRYAQDTCLELDLKSVGFSAQAPGLADSALAVAFDARHQAWVSALPKEPADLWDGLVTF
HHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEE
DGDSRRALFAHCVSLSVNAVYEAYNRKPRALAHADRIAHAVDLDMVAAGWTPTIENYFGR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VTKARILAAVREAKGERAGDRIEHLKKAEMAEQAQTLLAGSGWLPEPLRTPGRDVLSAVE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
SDAIDAAEAGADAAGEETAADGGETAVVEDDEVTEDESVALEAHATAAE
HHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]