Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 154246744

GI number: 154246744

Start: 3124585

End: 3125493

Strand: Direct

Name: yagI [H]

Synonym: Xaut_2805

Alternate gene names: 154246744

Gene position: 3124585-3125493 (Clockwise)

Preceding gene: 154246742

Following gene: 154246745

Centisome position: 58.86

GC content: 75.8

Gene sequence:

>909_bases
GTGGGACGGGCACACAGGCCCCCCGCCGTCGGGCCCGGCCCCGAGCCGGCGCGCGCCGGCGGCTTGTCTTCCGGCGAATC
CGCCGGCGGGGGCACCCAGAGCATCGAGCGCGCGGTGGCGCTGCTTCTGACGGTGGGCCGCTCGGCCCCCGAGGGCGCGC
GGCTGTCCGATCTGGTGCGGCTGTGCGGCCTGCCCAAGCCCACCGTGCGGCGGGTGCTGCTGGCGCTGGTGCGCACCGGC
CTCCTCGACCAGGACGAGGTGACGCGGCGCTATCATGTGGGGCCGGAAGCCTATGTGCTCGGCACCCTCGCCGGCACCCG
CTTCGGCATCCATGCCCTGGCGATGGACGGCCTCGCCCGCCTCGCCCGCACCAGCGGCGACTGCGCCTTCCTCTCCGTTC
CGCGCGGCGCATTCAGCGTGTGCCTGCACCGGGAGGAGGGCACCTGGCCCATCCGCACCCACGTGCTGCAGGCCGGCGAC
CGGCACCCGCTGGGAATCGGCGCCGGCGGGCTCGCGCTGCTCGCCGCTTTGCCGGATGCGGAGGTGGAGCGCATGCTCGC
CGCCAATGCGCCGGCGCTGGCGGCCCATTATCCCGGCTATGGGGTCGAGGTGCTGCGCGCGCAGGTGGTCGATGCCCGCG
CGCGGGGCTACGCGCTCAATCCCGGCCTTTATGTCGCCGGCTCCTGGGGCATCGCCGTGCCGGTGCTGGGGCCGGACGGG
CGTCCACTGGGTGCGCTGTCGCTGGCCGCCATCGAAAGCCGGCTCTCGCCTGAGCGTCAGGCTGAACTGGTGCCCCTGCT
GAAGCGCGAGGCGCAGGCGCTGGAAGCCGCCCTCGGCCACCGCGCCGGCGGCGAGCCCGCCTCGGCCGCGCTTCCCGCCG
GCCGTGCCATCGCCAAGGGGGCGCCGTGA

Upstream 100 bases:

>100_bases
GGGATTTTCGCAAGCCCATTATGGTCGTTGAAGACGCTGCGCTGCGGTGGTCTCAACGATATAACGATCTAGGTCCACAT
ACTGGATCATGGGAGAGCGC

Downstream 100 bases:

>100_bases
TGGTGCCCGCCCACAAGTCCCTGTCTTTCCGCGCGCCCCCTGCGCGCGCCTCCCGCCCGGAGCGTTCCCATGTCGCCTGA
ACCTGTCGAAACCCTTGCCG

Product: regulatory protein IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MGRAHRPPAVGPGPEPARAGGLSSGESAGGGTQSIERAVALLLTVGRSAPEGARLSDLVRLCGLPKPTVRRVLLALVRTG
LLDQDEVTRRYHVGPEAYVLGTLAGTRFGIHALAMDGLARLARTSGDCAFLSVPRGAFSVCLHREEGTWPIRTHVLQAGD
RHPLGIGAGGLALLAALPDAEVERMLAANAPALAAHYPGYGVEVLRAQVVDARARGYALNPGLYVAGSWGIAVPVLGPDG
RPLGALSLAAIESRLSPERQAELVPLLKREAQALEAALGHRAGGEPASAALPAGRAIAKGAP

Sequences:

>Translated_302_residues
MGRAHRPPAVGPGPEPARAGGLSSGESAGGGTQSIERAVALLLTVGRSAPEGARLSDLVRLCGLPKPTVRRVLLALVRTG
LLDQDEVTRRYHVGPEAYVLGTLAGTRFGIHALAMDGLARLARTSGDCAFLSVPRGAFSVCLHREEGTWPIRTHVLQAGD
RHPLGIGAGGLALLAALPDAEVERMLAANAPALAAHYPGYGVEVLRAQVVDARARGYALNPGLYVAGSWGIAVPVLGPDG
RPLGALSLAAIESRLSPERQAELVPLLKREAQALEAALGHRAGGEPASAALPAGRAIAKGAP
>Mature_301_residues
GRAHRPPAVGPGPEPARAGGLSSGESAGGGTQSIERAVALLLTVGRSAPEGARLSDLVRLCGLPKPTVRRVLLALVRTGL
LDQDEVTRRYHVGPEAYVLGTLAGTRFGIHALAMDGLARLARTSGDCAFLSVPRGAFSVCLHREEGTWPIRTHVLQAGDR
HPLGIGAGGLALLAALPDAEVERMLAANAPALAAHYPGYGVEVLRAQVVDARARGYALNPGLYVAGSWGIAVPVLGPDGR
PLGALSLAAIESRLSPERQAELVPLLKREAQALEAALGHRAGGEPASAALPAGRAIAKGAP

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=28.2258064516129, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31018; Mature: 30887

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRAHRPPAVGPGPEPARAGGLSSGESAGGGTQSIERAVALLLTVGRSAPEGARLSDLVR
CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LCGLPKPTVRRVLLALVRTGLLDQDEVTRRYHVGPEAYVLGTLAGTRFGIHALAMDGLAR
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHH
LARTSGDCAFLSVPRGAFSVCLHREEGTWPIRTHVLQAGDRHPLGIGAGGLALLAALPDA
HHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH
EVERMLAANAPALAAHYPGYGVEVLRAQVVDARARGYALNPGLYVAGSWGIAVPVLGPDG
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCCEEEEEECCCC
RPLGALSLAAIESRLSPERQAELVPLLKREAQALEAALGHRAGGEPASAALPAGRAIAKG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC
AP
CC
>Mature Secondary Structure 
GRAHRPPAVGPGPEPARAGGLSSGESAGGGTQSIERAVALLLTVGRSAPEGARLSDLVR
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LCGLPKPTVRRVLLALVRTGLLDQDEVTRRYHVGPEAYVLGTLAGTRFGIHALAMDGLAR
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHH
LARTSGDCAFLSVPRGAFSVCLHREEGTWPIRTHVLQAGDRHPLGIGAGGLALLAALPDA
HHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH
EVERMLAANAPALAAHYPGYGVEVLRAQVVDARARGYALNPGLYVAGSWGIAVPVLGPDG
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCCEEEEEECCCC
RPLGALSLAAIESRLSPERQAELVPLLKREAQALEAALGHRAGGEPASAALPAGRAIAKG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC
AP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]