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The map label for this gene is fecI [H]

Identifier: 154246716

GI number: 154246716

Start: 3074797

End: 3075312

Strand: Direct

Name: fecI [H]

Synonym: Xaut_2777

Alternate gene names: 154246716

Gene position: 3074797-3075312 (Clockwise)

Preceding gene: 154246712

Following gene: 154246717

Centisome position: 57.92

GC content: 64.15

Gene sequence:

>516_bases
GTGGAGCCGAAAAGTAGAATATTTCTATTAAACGCCTTCGCGCGGCATTACGACGAATTGCTGCGTCATGTCGCGCGTCG
GATCGGCAATCCGGCTGCGGCGAACGACGTGGTTCAGGACACTTTCCTGCGGGTTCATGCCTGCGCGCCCACCGCCGAGA
TTGCCAGCCCGGCGGCCTATCTCTTTCGCGTCGCCGATAACATCGCCATCGACCATCTGCGCCATGAAGCCGTGCGCTCG
CGGGTGGTTTCGGCGGACACCGAATGTGAGGGCGTCGCTGCGCCCGACCCCTCTCCCGAGCATGCCCTCGACTACAAGCA
GCGCCTGCGGGCGCTGGACGCCGCCGTCGCCGAGCTTCCGCCGAAGTGCCGCGAGGTGTTCCTGCTGCATAAGTTCGATG
GCCTGAGCCATGGCGAGATCGCCGAGCGCCTCGGCATCAGTCGCAGCATGGTGGAGAAGCATGTGATGAAGGCGCTGGTC
CACTGCCGCGACCGGCTGGCGGACCTGCTCGATTAG

Upstream 100 bases:

>100_bases
TCCGGCCCATGCACTATTTTGTCAGCATTGATTGGATCATCTGATGATTGGAATTGAAGCGTTGCCCGCTTTTTCCAATT
CCGACAGGAAGTTCCGAGTT

Downstream 100 bases:

>100_bases
GCCTCTGCCAACGAGATCGGCGACGTTCTGGGCGGTGGTCGTGCCCGGGAGCGATTTCTAGAAAATTTCTAAATGTTGAG
GTGAGGTGCCGGCCGGTCTA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MEPKSRIFLLNAFARHYDELLRHVARRIGNPAAANDVVQDTFLRVHACAPTAEIASPAAYLFRVADNIAIDHLRHEAVRS
RVVSADTECEGVAAPDPSPEHALDYKQRLRALDAAVAELPPKCREVFLLHKFDGLSHGEIAERLGISRSMVEKHVMKALV
HCRDRLADLLD

Sequences:

>Translated_171_residues
MEPKSRIFLLNAFARHYDELLRHVARRIGNPAAANDVVQDTFLRVHACAPTAEIASPAAYLFRVADNIAIDHLRHEAVRS
RVVSADTECEGVAAPDPSPEHALDYKQRLRALDAAVAELPPKCREVFLLHKFDGLSHGEIAERLGISRSMVEKHVMKALV
HCRDRLADLLD
>Mature_171_residues
MEPKSRIFLLNAFARHYDELLRHVARRIGNPAAANDVVQDTFLRVHACAPTAEIASPAAYLFRVADNIAIDHLRHEAVRS
RVVSADTECEGVAAPDPSPEHALDYKQRLRALDAAVAELPPKCREVFLLHKFDGLSHGEIAERLGISRSMVEKHVMKALV
HCRDRLADLLD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=151, Percent_Identity=35.0993377483444, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19088; Mature: 19088

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPKSRIFLLNAFARHYDELLRHVARRIGNPAAANDVVQDTFLRVHACAPTAEIASPAAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFRVADNIAIDHLRHEAVRSRVVSADTECEGVAAPDPSPEHALDYKQRLRALDAAVAELP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PKCREVFLLHKFDGLSHGEIAERLGISRSMVEKHVMKALVHCRDRLADLLD
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEPKSRIFLLNAFARHYDELLRHVARRIGNPAAANDVVQDTFLRVHACAPTAEIASPAAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFRVADNIAIDHLRHEAVRSRVVSADTECEGVAAPDPSPEHALDYKQRLRALDAAVAELP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PKCREVFLLHKFDGLSHGEIAERLGISRSMVEKHVMKALVHCRDRLADLLD
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]