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The map label for this gene is pcaH [H]

Identifier: 154246628

GI number: 154246628

Start: 2977268

End: 2977993

Strand: Direct

Name: pcaH [H]

Synonym: Xaut_2688

Alternate gene names: 154246628

Gene position: 2977268-2977993 (Clockwise)

Preceding gene: 154246627

Following gene: 154246629

Centisome position: 56.08

GC content: 66.8

Gene sequence:

>726_bases
ATGGTTGAGACGGGCGATTTCATGCGCCGGGACCGAGGCTGGCATCCGCCGGCCTTCACCCCCGGCTACAAGACCAGCGT
GCTGCGCTCGCCGCGCTTCGCGCTGGTGTCGCTGGAGCAGGGCATCGGCGAGAAGGCCGGCCCGATTTTTCCGCGGTCCG
GCCTCGATCCGCTCGACAATGACCTCATCCGCAATTTTTCCAAGGGCGGCGAGGCCATCGGCGAGCGCATCGTGGTGCAC
GGCCGGGTGCTCGACGAGAGCGGCCGTCCGGTGCCCGACACCCTCATCGAGGTGTGGCAGGCCAATGCCGGCGGGCGCTA
CCGGCACAAGAACGACAGCTATCTCGCCCCGCTCGATCCGAACTTCGGCGGCGTCGGTCGCTGCCTCACCGATTCCGAGG
GCCGCTATGCCTTCCGCACCATCCGCCCCGGCCCCTATCCGTGGCGCAACAACGGCTCGGACTGGCGGCCGGCGCACATC
CATTTTTCCGTCTTCGGCGAAGCCTTCGTGCAGCGGCTGATCTCCCAGCTGTATTTCGAGGGCGATCCGCTGATCCCGCT
GTGCCCCATCATCAATACCATTCCGGACAAGGCCGCCGTTGAGCGGCTGGTCGCCCGCCTCGACATGGGCCAGCAGATGC
CGTTCGACGCGCTGGCCTACCGCTTCGACATCGTGCTGCGTGGACGCCGGCAGACGTTCTTCGAGAACAAGAGGGAGGGG
CACTGA

Upstream 100 bases:

>100_bases
GCGGTCTATGCCGGCGTGCCGGCGGCGAACCGCGCCTACAAGATCGCCAAGGATGTCTACGCGCAAGCGCGTACCGACGG
CGACGCACAGGGAGAAAACC

Downstream 100 bases:

>100_bases
TGCCGGTCGAATACCTCAAGGAAACCCCGTCGCAGACCGGCGGCCCCTATGTGCATATCGGCACGCTGCCGGCGGTGGCG
GGCCTGCCTGTCCGCACGCA

Product: protocatechuate 3,4-dioxygenase subunit beta

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MVETGDFMRRDRGWHPPAFTPGYKTSVLRSPRFALVSLEQGIGEKAGPIFPRSGLDPLDNDLIRNFSKGGEAIGERIVVH
GRVLDESGRPVPDTLIEVWQANAGGRYRHKNDSYLAPLDPNFGGVGRCLTDSEGRYAFRTIRPGPYPWRNNGSDWRPAHI
HFSVFGEAFVQRLISQLYFEGDPLIPLCPIINTIPDKAAVERLVARLDMGQQMPFDALAYRFDIVLRGRRQTFFENKREG
H

Sequences:

>Translated_241_residues
MVETGDFMRRDRGWHPPAFTPGYKTSVLRSPRFALVSLEQGIGEKAGPIFPRSGLDPLDNDLIRNFSKGGEAIGERIVVH
GRVLDESGRPVPDTLIEVWQANAGGRYRHKNDSYLAPLDPNFGGVGRCLTDSEGRYAFRTIRPGPYPWRNNGSDWRPAHI
HFSVFGEAFVQRLISQLYFEGDPLIPLCPIINTIPDKAAVERLVARLDMGQQMPFDALAYRFDIVLRGRRQTFFENKREG
H
>Mature_241_residues
MVETGDFMRRDRGWHPPAFTPGYKTSVLRSPRFALVSLEQGIGEKAGPIFPRSGLDPLDNDLIRNFSKGGEAIGERIVVH
GRVLDESGRPVPDTLIEVWQANAGGRYRHKNDSYLAPLDPNFGGVGRCLTDSEGRYAFRTIRPGPYPWRNNGSDWRPAHI
HFSVFGEAFVQRLISQLYFEGDPLIPLCPIINTIPDKAAVERLVARLDMGQQMPFDALAYRFDIVLRGRRQTFFENKREG
H

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 27264; Mature: 27264

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVETGDFMRRDRGWHPPAFTPGYKTSVLRSPRFALVSLEQGIGEKAGPIFPRSGLDPLDN
CCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHH
DLIRNFSKGGEAIGERIVVHGRVLDESGRPVPDTLIEVWQANAGGRYRHKNDSYLAPLDP
HHHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCC
NFGGVGRCLTDSEGRYAFRTIRPGPYPWRNNGSDWRPAHIHFSVFGEAFVQRLISQLYFE
CCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCC
GDPLIPLCPIINTIPDKAAVERLVARLDMGQQMPFDALAYRFDIVLRGRRQTFFENKREG
CCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCHHHHHHHCCCC
H
C
>Mature Secondary Structure
MVETGDFMRRDRGWHPPAFTPGYKTSVLRSPRFALVSLEQGIGEKAGPIFPRSGLDPLDN
CCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHH
DLIRNFSKGGEAIGERIVVHGRVLDESGRPVPDTLIEVWQANAGGRYRHKNDSYLAPLDP
HHHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCC
NFGGVGRCLTDSEGRYAFRTIRPGPYPWRNNGSDWRPAHIHFSVFGEAFVQRLISQLYFE
CCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCC
GDPLIPLCPIINTIPDKAAVERLVARLDMGQQMPFDALAYRFDIVLRGRRQTFFENKREG
CCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCHHHHHHHCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407791; 115853; 3194022; 7990141; 9254599; 9254600; 9298971 [H]