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The map label for this gene is nrtC [H]

Identifier: 154246558

GI number: 154246558

Start: 2902582

End: 2903946

Strand: Direct

Name: nrtC [H]

Synonym: Xaut_2617

Alternate gene names: 154246558

Gene position: 2902582-2903946 (Clockwise)

Preceding gene: 154246557

Following gene: 154246559

Centisome position: 54.67

GC content: 65.57

Gene sequence:

>1365_bases
ATGTCGATGTTCTCGAACCCGTTCTCGCTGAAGTCCAAGCTCGGCCGCTGCCTGTGCGGGCGCCATGCGACGCAGGAGGA
GCACGCGGCATCGGAACGGGCGGCGGGGCTGGGCGACGAGGCGCGCTACCGCGATGTGGTGGCCTCCGGCCTCATGCGAG
CGCTGTTTCCCAACGATATGAAGCGCCGCGCCTTCCTCAAGGCGGTGGGCGCCTCCACCGCCGCGGCGGCGCTCGCCACC
TTCTTCCCGCTGGACGCCGCGACTGAGGCGTTCGCCGCCACCGGCAAGCCGGAGAAGACCGACCTGAAGGTGGGCTTCAT
CCCCATCACCTGCGCCACCCCTATCATCATGGCGCACCCCATGGGCTTCTACGCCAAGCAGGGCCTGAACGTGGAGGTGG
TGAAGACCGCCGGCTGGGCGGTGGTCCGCGACAAGACCATCAACAAGGAGTATGACGCCGCCCACATGCTGGCGCCCATG
CCGCTGGCCATCTCCCAGGGCCTCGGCTCCAACCCGATCCCCTTTGTCACGGCCGCCATCGAGAACATCAACGGCCAGTC
CTTCACCCTTGGCATCAAGCATAAGGACAAGATGGACGTGAAGTCGTGGAAGGGGCTGAAGTTCGCCATTCCCTACGACT
TCTCCATGCACAATTACCTGCTGCGCTATCTGCTGGCGGAGAACGGCATCGATCCCGACTCCGACGTGCAGCTGCGCGTG
GTGCCGCCGCCGGAGATGGTGGCGAACCTGCGTGCCGAGAACATCGACGGCTTCCTCGCCCCCGACAATGTTGCCCAGCG
CGCGGTGTTCGACGGGGTGGGCTTCATCCACTCCCTGTCCAAGACCATGTGGGACGGCCACCCCTGCTGCGCCTTCGCGG
CGAGCCGGGAGTTCATCACCACCATGCCCAACACCTATGCGGCGCTACTGCGGGCCATCGTCGATGCCACCGGCTACGCC
TCGAAGACCGAGAACCGCAAGGCCATCGCCGAGGCCATCGCCCCGCCGGCCTATCTCAACGCGCCGGTGACGGTGCTGGA
GCAGGTGCTGGTGGGCAAGTACGCGGACGGCCTGGGCAACATCAAGGACGACCCCAAGCGCATCGATTTCGATCCGTTCC
CGTGGGAGAGCTTCGCGGTTTGGATGCTGACCCAGATGAAGCGCTGGGGCCAGATCAAGGGCGAGGTGGACTATGCCTCG
GTGGCCAACCAGGTGTTCCTCGCCACCGACGCCGCCAGGGTGATGAAGGAGATGGGGCTCACCCCGCCCGCCACCACCTC
CAAGTCGTTCTTGGTGATGGGCAAGGTGTTCGATCCGGCAAAGCCCGCCGAATACGTCGCCTCCTTCGCCATCAAGCGGA
GCTGA

Upstream 100 bases:

>100_bases
GCCACCGGTGCCTGCCCCCGGCTAGGGGTGGCACGGGCATTGCCATCACCAAGCGTCACCTGCCCGCCGAATCCTCGCAC
TCGTCTTCCGGAGCGCCCTT

Downstream 100 bases:

>100_bases
GCGATGAAGAGCCTCGGCGTGCGCGCCGGCCTGCTTTCGGTGCTGCTGTTCATCGCCTTCTGCGTGCTCTGGCAGGTCGC
CGTCACCCCGAGCGCAAGCA

Product: ABC transporter nitrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MSMFSNPFSLKSKLGRCLCGRHATQEEHAASERAAGLGDEARYRDVVASGLMRALFPNDMKRRAFLKAVGASTAAAALAT
FFPLDAATEAFAATGKPEKTDLKVGFIPITCATPIIMAHPMGFYAKQGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPM
PLAISQGLGSNPIPFVTAAIENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGIDPDSDVQLRV
VPPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCAFAASREFITTMPNTYAALLRAIVDATGYA
SKTENRKAIAEAIAPPAYLNAPVTVLEQVLVGKYADGLGNIKDDPKRIDFDPFPWESFAVWMLTQMKRWGQIKGEVDYAS
VANQVFLATDAARVMKEMGLTPPATTSKSFLVMGKVFDPAKPAEYVASFAIKRS

Sequences:

>Translated_454_residues
MSMFSNPFSLKSKLGRCLCGRHATQEEHAASERAAGLGDEARYRDVVASGLMRALFPNDMKRRAFLKAVGASTAAAALAT
FFPLDAATEAFAATGKPEKTDLKVGFIPITCATPIIMAHPMGFYAKQGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPM
PLAISQGLGSNPIPFVTAAIENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGIDPDSDVQLRV
VPPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCAFAASREFITTMPNTYAALLRAIVDATGYA
SKTENRKAIAEAIAPPAYLNAPVTVLEQVLVGKYADGLGNIKDDPKRIDFDPFPWESFAVWMLTQMKRWGQIKGEVDYAS
VANQVFLATDAARVMKEMGLTPPATTSKSFLVMGKVFDPAKPAEYVASFAIKRS
>Mature_453_residues
SMFSNPFSLKSKLGRCLCGRHATQEEHAASERAAGLGDEARYRDVVASGLMRALFPNDMKRRAFLKAVGASTAAAALATF
FPLDAATEAFAATGKPEKTDLKVGFIPITCATPIIMAHPMGFYAKQGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPMP
LAISQGLGSNPIPFVTAAIENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGIDPDSDVQLRVV
PPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCAFAASREFITTMPNTYAALLRAIVDATGYAS
KTENRKAIAEAIAPPAYLNAPVTVLEQVLVGKYADGLGNIKDDPKRIDFDPFPWESFAVWMLTQMKRWGQIKGEVDYASV
ANQVFLATDAARVMKEMGLTPPATTSKSFLVMGKVFDPAKPAEYVASFAIKRS

Specific function: Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 49443; Mature: 49311

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMFSNPFSLKSKLGRCLCGRHATQEEHAASERAAGLGDEARYRDVVASGLMRALFPNDM
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH
KRRAFLKAVGASTAAAALATFFPLDAATEAFAATGKPEKTDLKVGFIPITCATPIIMAHP
HHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCHHHHHCC
MGFYAKQGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPMPLAISQGLGSNPIPFVTAAI
CCHHHHCCCCEEEEECCCEEEEECCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCHHHHHH
ENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGIDPDSDVQLRV
HCCCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
VPPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCAFAASREFIT
ECCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHH
TMPNTYAALLRAIVDATGYASKTENRKAIAEAIAPPAYLNAPVTVLEQVLVGKYADGLGN
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCC
IKDDPKRIDFDPFPWESFAVWMLTQMKRWGQIKGEVDYASVANQVFLATDAARVMKEMGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCEEEEEHHHHHHHHHCCC
TPPATTSKSFLVMGKVFDPAKPAEYVASFAIKRS
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SMFSNPFSLKSKLGRCLCGRHATQEEHAASERAAGLGDEARYRDVVASGLMRALFPNDM
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH
KRRAFLKAVGASTAAAALATFFPLDAATEAFAATGKPEKTDLKVGFIPITCATPIIMAHP
HHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCHHHHHCC
MGFYAKQGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPMPLAISQGLGSNPIPFVTAAI
CCHHHHCCCCEEEEECCCEEEEECCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCHHHHHH
ENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGIDPDSDVQLRV
HCCCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
VPPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCAFAASREFIT
ECCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHH
TMPNTYAALLRAIVDATGYASKTENRKAIAEAIAPPAYLNAPVTVLEQVLVGKYADGLGN
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCC
IKDDPKRIDFDPFPWESFAVWMLTQMKRWGQIKGEVDYASVANQVFLATDAARVMKEMGL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCEEEEEHHHHHHHHHCCC
TPPATTSKSFLVMGKVFDPAKPAEYVASFAIKRS
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]