| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is hfaC [H]
Identifier: 154246540
GI number: 154246540
Start: 2887056
End: 2888891
Strand: Direct
Name: hfaC [H]
Synonym: Xaut_2599
Alternate gene names: 154246540
Gene position: 2887056-2888891 (Clockwise)
Preceding gene: 154246539
Following gene: 154246549
Centisome position: 54.38
GC content: 68.3
Gene sequence:
>1836_bases ATGGCTCCTCCCCTCGTTCTCCTCCAGGACATCCATCTGCGCTTCGGCGCGACCCCCCTGCTCGACGGGGCGGAACTTTC TGTTTCCGCCTCCGAGCGCGTGTGCCTTGTCGGGCGCAACGGTTCCGGCAAGTCGACGCTGCTGAAAGTGGCGGCGGGCA TGGTGGCGCCGGATTCCGGCACCCGTTTCTTCCAGCCCGGCACCACCGTGCGCTACCTGCCGCAGGAGCCCGATTTCTCC GGCTACGCCACGACCTTGGCCTATGTTGAGGCGGGGATGGGGCCGGGGGATCAGGAGTATCGCGCCCAGTACCTGCTCGA CGAACTGGGCCTGAGCGGCCGGGAAGACCCCTCCAATCTCTCCGGCGGCGAGGCGCGGCGGGCTGCGCTCGCCCGCGTCA TCGCGCCGGAGCCGGACGTGCTGCTCCTCGACGAGCCCACCAACCATCTCGACCTGCCGGCCATCGAATGGCTGGAAAGC GAGCTGAAGAGCTTGCGCTCGGCCATCGTCCTCATCAGCCATGACCGGCGGTTCCTGGAAACCCTGTCGCGCGCCACCGT GTGGCTCGACCGGGGCCAGACCCGGCGGCTCGAACAGGGCTTTTCCGCTTTCGAGGCCTGGCGCGACGAGGTGCTGGAGC AGGAGGAGACCGAGCGCCACAAGCTCGACCGCAAGATCGTCGCCGAACTGGACTGGCTGCGATACGGCGTCACCGCCCGG CGCAAGCGCAACGTGCGGCGCCTCGGCCTGCTGCATTCCATGCGCAAGGATCGCCGCGAGGAGCGCCGCGCCGTCGGCAA CGTCAAGCTCACGGTGAGCGAGGCGGAGACCTCGGGCAAGCTGGTCATCGAGGCCAAGGGCATTTCCAAGTCCTACGGCG ACCGCACCGTGGTGAAGGATTTCTCCACCCGCATCCTGCGCGGCGACCGCATCGGCATCATCGGCCCCAATGGCGCGGGC AAGACCACCCTCATCAAGCTCCTGACCGGGGAGCTTGCCCCCGACAGCGGCACGGTGAAGCTCGGGACCAACCTGGAAAT CGCGAGCCTCGACCAGAAGCGCGCGGCGCTCGATCCCACCACCACCCTGCGCGATGCGCTCACCGGCGGCGGCTCCGACC AGGTGATGGTGGGCGGCCAGCCCAAGCACGTCATCGGCTACCTGAAGGACTTCCTGTTCTCGCCCGACCAGGCTAACGCA CCGCTATCGGTGCTATCCGGCGGCGAGCGCGGGCGACTGATGCTGGCGCGCTCCCTGGCGCTGCCCTCCAACATGCTGGT GCTGGACGAGCCCACCAACGACCTGGATCTGGAAACCCTCGACCTGCTGCAGGAGATGGTGGCTGATTATCCCGGCACGG TGATCCTGGTGAGCCACGACCGTGACTTCCTCGACCGCACCGTCTCCAGCGTCATCGTGGCCGAGGGCGACGGTGTGTTC CGGGAATATCCCGGCGGCTATTCGGACATGGTGACCCAGCGTGGCCGAGGCGTGGAGGCGCGGGACAAGGGCGCTCCGGT AGCGAAGGCCAAGGGCGGCGCGCCGGAAGGCAAGCCCGTGCCTGCGGCTCCTGCAGCCGCGGCGCCGGCCAAGGACAAGC GCAAGCTCTCCTTCCACGAGCAGCACGCGCTGAAAACCCTGCCCAAGACCATGGCGACGCTCAAGGCCAAGGTGGAGAAG CTCGCCGCCGAGCTGGCGGATCCGGCCCTCTACGCCCGCGACCCCGCCCGCTTCCAGAAGACCTCCGCCGCGCTCACCGC GGCGCAGGGGGAGCTGGATGCGGCGGAAGAGGAGTGGCTGCGGCTGGAAATCCTGAAGGAAGAGCTGGAAGGCTGA
Upstream 100 bases:
>100_bases GCGTCCGGACGGTGCGTTTCGCGCGTCCCTGGATCGAGCTGAGCGGCGGGCGCCGCAGCAACCCTTTGCGTTCCGGCGCC GGGGGCTTTAATCCGGCGCC
Downstream 100 bases:
>100_bases GCGACGGCGGCGGGGCCCCTCGGCTCAGCCGCCCTTGCGTGCCACCAGCACCGCGCTCTCGAAATCGATCACCAGGTCGC CGTGCTGGTTGGTGCCGGAA
Product: ABC transporter-like protein
Products: NA
Alternate protein names: Protein HfaC [H]
Number of amino acids: Translated: 611; Mature: 610
Protein sequence:
>611_residues MAPPLVLLQDIHLRFGATPLLDGAELSVSASERVCLVGRNGSGKSTLLKVAAGMVAPDSGTRFFQPGTTVRYLPQEPDFS GYATTLAYVEAGMGPGDQEYRAQYLLDELGLSGREDPSNLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLES ELKSLRSAIVLISHDRRFLETLSRATVWLDRGQTRRLEQGFSAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTAR RKRNVRRLGLLHSMRKDRREERRAVGNVKLTVSEAETSGKLVIEAKGISKSYGDRTVVKDFSTRILRGDRIGIIGPNGAG KTTLIKLLTGELAPDSGTVKLGTNLEIASLDQKRAALDPTTTLRDALTGGGSDQVMVGGQPKHVIGYLKDFLFSPDQANA PLSVLSGGERGRLMLARSLALPSNMLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIVAEGDGVF REYPGGYSDMVTQRGRGVEARDKGAPVAKAKGGAPEGKPVPAAPAAAAPAKDKRKLSFHEQHALKTLPKTMATLKAKVEK LAAELADPALYARDPARFQKTSAALTAAQGELDAAEEEWLRLEILKEELEG
Sequences:
>Translated_611_residues MAPPLVLLQDIHLRFGATPLLDGAELSVSASERVCLVGRNGSGKSTLLKVAAGMVAPDSGTRFFQPGTTVRYLPQEPDFS GYATTLAYVEAGMGPGDQEYRAQYLLDELGLSGREDPSNLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLES ELKSLRSAIVLISHDRRFLETLSRATVWLDRGQTRRLEQGFSAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTAR RKRNVRRLGLLHSMRKDRREERRAVGNVKLTVSEAETSGKLVIEAKGISKSYGDRTVVKDFSTRILRGDRIGIIGPNGAG KTTLIKLLTGELAPDSGTVKLGTNLEIASLDQKRAALDPTTTLRDALTGGGSDQVMVGGQPKHVIGYLKDFLFSPDQANA PLSVLSGGERGRLMLARSLALPSNMLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIVAEGDGVF REYPGGYSDMVTQRGRGVEARDKGAPVAKAKGGAPEGKPVPAAPAAAAPAKDKRKLSFHEQHALKTLPKTMATLKAKVEK LAAELADPALYARDPARFQKTSAALTAAQGELDAAEEEWLRLEILKEELEG >Mature_610_residues APPLVLLQDIHLRFGATPLLDGAELSVSASERVCLVGRNGSGKSTLLKVAAGMVAPDSGTRFFQPGTTVRYLPQEPDFSG YATTLAYVEAGMGPGDQEYRAQYLLDELGLSGREDPSNLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESE LKSLRSAIVLISHDRRFLETLSRATVWLDRGQTRRLEQGFSAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTARR KRNVRRLGLLHSMRKDRREERRAVGNVKLTVSEAETSGKLVIEAKGISKSYGDRTVVKDFSTRILRGDRIGIIGPNGAGK TTLIKLLTGELAPDSGTVKLGTNLEIASLDQKRAALDPTTTLRDALTGGGSDQVMVGGQPKHVIGYLKDFLFSPDQANAP LSVLSGGERGRLMLARSLALPSNMLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIVAEGDGVFR EYPGGYSDMVTQRGRGVEARDKGAPVAKAKGGAPEGKPVPAAPAAAAPAKDKRKLSFHEQHALKTLPKTMATLKAKVEKL AAELADPALYARDPARFQKTSAALTAAQGELDAAEEEWLRLEILKEELEG
Specific function: Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adhere to surfaces [H]
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=30.2973977695167, Blast_Score=174, Evalue=3e-43, Organism=Homo sapiens, GI10947137, Length=521, Percent_Identity=28.0230326295585, Blast_Score=148, Evalue=2e-35, Organism=Homo sapiens, GI27881506, Length=521, Percent_Identity=28.0230326295585, Blast_Score=148, Evalue=2e-35, Organism=Homo sapiens, GI69354671, Length=393, Percent_Identity=29.2620865139949, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI10947135, Length=393, Percent_Identity=29.2620865139949, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI6005701, Length=158, Percent_Identity=30.379746835443, Blast_Score=69, Evalue=2e-11, Organism=Escherichia coli, GI1787182, Length=641, Percent_Identity=40.8736349453978, Blast_Score=432, Evalue=1e-122, Organism=Escherichia coli, GI2367384, Length=523, Percent_Identity=33.2695984703633, Blast_Score=273, Evalue=2e-74, Organism=Escherichia coli, GI1789751, Length=668, Percent_Identity=29.4910179640719, Blast_Score=222, Evalue=5e-59, Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=28.2051282051282, Blast_Score=202, Evalue=4e-53, Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=34.9726775956284, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI87081782, Length=504, Percent_Identity=25, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=32.6424870466321, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=28.8990825688073, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=29.0748898678414, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=30.9178743961353, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=26.2910798122066, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=31.5217391304348, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI145693107, Length=385, Percent_Identity=21.038961038961, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787758, Length=228, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=29.9107142857143, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1786319, Length=198, Percent_Identity=29.2929292929293, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=25.1101321585903, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=29.2452830188679, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=26.3392857142857, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI48994997, Length=201, Percent_Identity=25.3731343283582, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=31.981981981982, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559834, Length=530, Percent_Identity=26.7924528301887, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI17555318, Length=538, Percent_Identity=26.2081784386617, Blast_Score=154, Evalue=1e-37, Organism=Caenorhabditis elegans, GI17553372, Length=388, Percent_Identity=31.9587628865979, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI71988343, Length=198, Percent_Identity=31.3131313131313, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=292, Percent_Identity=24.3150684931507, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=545, Percent_Identity=26.2385321100917, Blast_Score=153, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=27.037037037037, Blast_Score=150, Evalue=5e-37, Organism=Saccharomyces cerevisiae, GI6323278, Length=358, Percent_Identity=29.8882681564246, Blast_Score=114, Evalue=5e-26, Organism=Saccharomyces cerevisiae, GI6324314, Length=356, Percent_Identity=30.3370786516854, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6325030, Length=356, Percent_Identity=27.5280898876405, Blast_Score=103, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6322640, Length=218, Percent_Identity=29.8165137614679, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24642252, Length=534, Percent_Identity=28.2771535580524, Blast_Score=179, Evalue=4e-45, Organism=Drosophila melanogaster, GI18859989, Length=534, Percent_Identity=28.2771535580524, Blast_Score=179, Evalue=4e-45, Organism=Drosophila melanogaster, GI24666836, Length=543, Percent_Identity=29.2817679558011, Blast_Score=171, Evalue=1e-42, Organism=Drosophila melanogaster, GI24641342, Length=551, Percent_Identity=26.1343012704174, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI221500365, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI116007184, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI85725262, Length=167, Percent_Identity=33.5329341317365, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574150, Length=196, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007328, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR007406 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 66516; Mature: 66384
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPPLVLLQDIHLRFGATPLLDGAELSVSASERVCLVGRNGSGKSTLLKVAAGMVAPDSG CCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCC TRFFQPGTTVRYLPQEPDFSGYATTLAYVEAGMGPGDQEYRAQYLLDELGLSGREDPSNL CEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC SGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELKSLRSAIVLISHDRRFLE CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEECCHHHHH TLSRATVWLDRGQTRRLEQGFSAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTAR HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RKRNVRRLGLLHSMRKDRREERRAVGNVKLTVSEAETSGKLVIEAKGISKSYGDRTVVKD HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH FSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSGTVKLGTNLEIASLDQKRAALDPT HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCHHHHCCCCH TTLRDALTGGGSDQVMVGGQPKHVIGYLKDFLFSPDQANAPLSVLSGGERGRLMLARSLA HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEHHHC LPSNMLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIVAEGDGVF CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHEEEECCCCCH REYPGGYSDMVTQRGRGVEARDKGAPVAKAKGGAPEGKPVPAAPAAAAPAKDKRKLSFHE HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QHALKTLPKTMATLKAKVEKLAAELADPALYARDPARFQKTSAALTAAQGELDAAEEEWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH RLEILKEELEG HHHHHHHHHCC >Mature Secondary Structure APPLVLLQDIHLRFGATPLLDGAELSVSASERVCLVGRNGSGKSTLLKVAAGMVAPDSG CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCCC TRFFQPGTTVRYLPQEPDFSGYATTLAYVEAGMGPGDQEYRAQYLLDELGLSGREDPSNL CEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC SGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELKSLRSAIVLISHDRRFLE CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEECCHHHHH TLSRATVWLDRGQTRRLEQGFSAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTAR HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RKRNVRRLGLLHSMRKDRREERRAVGNVKLTVSEAETSGKLVIEAKGISKSYGDRTVVKD HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH FSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSGTVKLGTNLEIASLDQKRAALDPT HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCHHHHCCCCH TTLRDALTGGGSDQVMVGGQPKHVIGYLKDFLFSPDQANAPLSVLSGGERGRLMLARSLA HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEHHHC LPSNMLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIVAEGDGVF CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHEEEECCCCCH REYPGGYSDMVTQRGRGVEARDKGAPVAKAKGGAPEGKPVPAAPAAAAPAKDKRKLSFHE HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QHALKTLPKTMATLKAKVEKLAAELADPALYARDPARFQKTSAALTAAQGELDAAEEEWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH RLEILKEELEG HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 8150261 [H]