Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 154246447

GI number: 154246447

Start: 2801223

End: 2801888

Strand: Reverse

Name: pdtaR [H]

Synonym: Xaut_2506

Alternate gene names: 154246447

Gene position: 2801888-2801223 (Counterclockwise)

Preceding gene: 154246451

Following gene: 154246446

Centisome position: 52.78

GC content: 64.41

Gene sequence:

>666_bases
TTGACCTTGCCGGTCCCGGCGGGTGAGGTGAGGCGCGGCTCCGTCCCGCCGCACCTGCCAATGCCCCGGACCCTCATGGC
GAATGATCTCTCGCTGCGGATCGTGATCGTGGACGAAAGCCCCGTCCGCGCCGCCATTCTGGAGGAAGGCCTGAAGGAGG
CCGGCTTCCTCAATGTGTTGCGCATCACCGGGCGCACCAACCTGCTCGAGCGCATCTACGCCATCGACCCGGACGTGATC
CTCATCGACCTCGAGGACCCCTCCCGCGACACCATCGAGCAGATGTTCCAGGTGAGCCGCGAGGTGAAGCGACCCATCGC
CATGTTCGTGGACCAGACCGACTCGAAGACCATCGAGGATGCCATCGAGGCCGGCGTCGCCTCCTATGTGGTGGACGGTC
TGCGCAAGGACCGGGTGAAGCCCATCCTGGAGACCACCATCTCCCGCTTCCGTGCCTTTGCAAGGCTCAAGGCGGAGCTG
GAGGAGGCGAAAAACCAGCTGGAGGAGCGCAAGGTGGTGGACCGGGCCAAGACGATCCTCATGAAGATGAAGGGCATCGA
CGAAGAGGCCGCCTACGGCCTGCTGCGCCGCACCGCCATGAACGAGAAGAAGCGCATCGCCGACATTGCCCAGTCCATCA
TCACCGCTGCGGAGCTCCTGCGATGA

Upstream 100 bases:

>100_bases
AACCTCGGCCCATGCACCCGACGCGCGGCGCGACGCCGCATTCGCCCGCGTTCTAGAGCGCGATTGCGCCAAGGTCCACG
CCGGCGGCGTCCGGGAAGGC

Downstream 100 bases:

>100_bases
GACGGCTCGCCATGGGGTTCATCCCCCTCACCGACGCGGCGGTGCTGATCGCCGCCGCGGAGCGCGGCTTCGCCATGGCG
GAGGGCATCGAGATCGAGCT

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTLPVPAGEVRRGSVPPHLPMPRTLMANDLSLRIVIVDESPVRAAILEEGLKEAGFLNVLRITGRTNLLERIYAIDPDVI
LIDLEDPSRDTIEQMFQVSREVKRPIAMFVDQTDSKTIEDAIEAGVASYVVDGLRKDRVKPILETTISRFRAFARLKAEL
EEAKNQLEERKVVDRAKTILMKMKGIDEEAAYGLLRRTAMNEKKRIADIAQSIITAAELLR

Sequences:

>Translated_221_residues
MTLPVPAGEVRRGSVPPHLPMPRTLMANDLSLRIVIVDESPVRAAILEEGLKEAGFLNVLRITGRTNLLERIYAIDPDVI
LIDLEDPSRDTIEQMFQVSREVKRPIAMFVDQTDSKTIEDAIEAGVASYVVDGLRKDRVKPILETTISRFRAFARLKAEL
EEAKNQLEERKVVDRAKTILMKMKGIDEEAAYGLLRRTAMNEKKRIADIAQSIITAAELLR
>Mature_220_residues
TLPVPAGEVRRGSVPPHLPMPRTLMANDLSLRIVIVDESPVRAAILEEGLKEAGFLNVLRITGRTNLLERIYAIDPDVIL
IDLEDPSRDTIEQMFQVSREVKRPIAMFVDQTDSKTIEDAIEAGVASYVVDGLRKDRVKPILETTISRFRAFARLKAELE
EAKNQLEERKVVDRAKTILMKMKGIDEEAAYGLLRRTAMNEKKRIADIAQSIITAAELLR

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24875; Mature: 24744

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPVPAGEVRRGSVPPHLPMPRTLMANDLSLRIVIVDESPVRAAILEEGLKEAGFLNVL
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHH
RITGRTNLLERIYAIDPDVILIDLEDPSRDTIEQMFQVSREVKRPIAMFVDQTDSKTIED
EECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AIEAGVASYVVDGLRKDRVKPILETTISRFRAFARLKAELEEAKNQLEERKVVDRAKTIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKMKGIDEEAAYGLLRRTAMNEKKRIADIAQSIITAAELLR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TLPVPAGEVRRGSVPPHLPMPRTLMANDLSLRIVIVDESPVRAAILEEGLKEAGFLNVL
CCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHH
RITGRTNLLERIYAIDPDVILIDLEDPSRDTIEQMFQVSREVKRPIAMFVDQTDSKTIED
EECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AIEAGVASYVVDGLRKDRVKPILETTISRFRAFARLKAELEEAKNQLEERKVVDRAKTIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKMKGIDEEAAYGLLRRTAMNEKKRIADIAQSIITAAELLR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]