| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is menB [C]
Identifier: 154245800
GI number: 154245800
Start: 2089362
End: 2090153
Strand: Reverse
Name: menB [C]
Synonym: Xaut_1856
Alternate gene names: 154245800
Gene position: 2090153-2089362 (Counterclockwise)
Preceding gene: 154245801
Following gene: 154245799
Centisome position: 39.37
GC content: 69.07
Gene sequence:
>792_bases ATGAGCCTCAACACCACCGGCCTCATCACCACCGTCGAGGATGGCGTCGCCGTCATCACCCTCGACCGTCCGGAGGTGCG CAACGCCTTCGACGATGCGCTCATCGCCGCGCTGACCCGCGCCTATGATGCCGCCGCCGTCGATCCACAGGTCTACGCCG TCCTGCTGAAGGCCAACGGCCCCACCTTTTGTGCCGGGGCGGACCTCAACTGGATGCGTCGCATGGCGACCTATAGCCGG CAGGAGAACCTCGCCGACGCCATGGCGCTGGCGACGCTCATGCGCACCATCGACCTGTGCCCCAAGCCCACCCTGGTGCG AGTGCACGGCTCGGCCTTTGCCGGCGCCACCGGGCTGATCGCGGCCAGCGACATCGTCGTCGCGGTGCCGGAGGCGGAAT TCGCGATCACCGAGGTGCGCATCGGCCTCATCCCCTCGGTCATCAGCCCCTATCTGGTGCGGGCCATGGGGGCGCGGCAG GCGCGGCGCTATTTCCTCACCGCCGAGCGCTTTTCCGCCGAAACGGCGCTCGCCCTCGGCCTCGTGCATGAGGTGGTGAG CGCAGAGGAACTGGACGCCGCCATCGTCCGGCACCTCAAGGCGCTGAAGGCCGCGAGCCCCGGCGCCATGGCCGCCACAA AGGCTCTGATCGCCGCCGTGGACCGGCCCTTCGACCAGACCGTGCTGCAGGACACCGCCCGCCGCATCGCCGACCAGCGC GTGAGCGCCGACGGACGCGAGGGCGTTTCCGCCTTCCTCGAAAAAAGAAAACCCACTTGGGGGGCCGCATGA
Upstream 100 bases:
>100_bases GCCCTCTCCGCCGCGCTCAACGCCCCCGAGCAGGAGACGCGCTTCGGCGTGTTCCGCATGTGATGGCGCGCGTTGACGGC CAAGTCCGGAGCACCATCCC
Downstream 100 bases:
>100_bases CCAAAGCGATCCGCACCCTGCTCGTCGCCAATCGCGGCGAGATCGCCGTGCGCGTGATGCGCACCGCCAAGGCCATGGGC ATCCGCACCGTCGCCGTCTA
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSLNTTGLITTVEDGVAVITLDRPEVRNAFDDALIAALTRAYDAAAVDPQVYAVLLKANGPTFCAGADLNWMRRMATYSR QENLADAMALATLMRTIDLCPKPTLVRVHGSAFAGATGLIAASDIVVAVPEAEFAITEVRIGLIPSVISPYLVRAMGARQ ARRYFLTAERFSAETALALGLVHEVVSAEELDAAIVRHLKALKAASPGAMAATKALIAAVDRPFDQTVLQDTARRIADQR VSADGREGVSAFLEKRKPTWGAA
Sequences:
>Translated_263_residues MSLNTTGLITTVEDGVAVITLDRPEVRNAFDDALIAALTRAYDAAAVDPQVYAVLLKANGPTFCAGADLNWMRRMATYSR QENLADAMALATLMRTIDLCPKPTLVRVHGSAFAGATGLIAASDIVVAVPEAEFAITEVRIGLIPSVISPYLVRAMGARQ ARRYFLTAERFSAETALALGLVHEVVSAEELDAAIVRHLKALKAASPGAMAATKALIAAVDRPFDQTVLQDTARRIADQR VSADGREGVSAFLEKRKPTWGAA >Mature_262_residues SLNTTGLITTVEDGVAVITLDRPEVRNAFDDALIAALTRAYDAAAVDPQVYAVLLKANGPTFCAGADLNWMRRMATYSRQ ENLADAMALATLMRTIDLCPKPTLVRVHGSAFAGATGLIAASDIVVAVPEAEFAITEVRIGLIPSVISPYLVRAMGARQA RRYFLTAERFSAETALALGLVHEVVSAEELDAAIVRHLKALKAASPGAMAATKALIAAVDRPFDQTVLQDTARRIADQRV SADGREGVSAFLEKRKPTWGAA
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=256, Percent_Identity=30.46875, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI194097323, Length=251, Percent_Identity=30.6772908366534, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI45643119, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI260275230, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI260274832, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI70995211, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI37594471, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI37594469, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI157694516, Length=210, Percent_Identity=25.2380952380952, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI213417737, Length=210, Percent_Identity=25.2380952380952, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4502327, Length=252, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI221136756, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI221136753, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI221307494, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1788597, Length=249, Percent_Identity=29.718875502008, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787660, Length=262, Percent_Identity=33.969465648855, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787659, Length=261, Percent_Identity=29.5019157088123, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082183, Length=267, Percent_Identity=28.0898876404494, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790281, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI221142681, Length=258, Percent_Identity=29.4573643410853, Blast_Score=72, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17554946, Length=254, Percent_Identity=28.3464566929134, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17535521, Length=258, Percent_Identity=25.968992248062, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI25145438, Length=249, Percent_Identity=29.3172690763052, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17540714, Length=189, Percent_Identity=27.5132275132275, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17534483, Length=234, Percent_Identity=27.3504273504274, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17549921, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536985, Length=183, Percent_Identity=26.2295081967213, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560910, Length=263, Percent_Identity=25.4752851711027, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17540306, Length=235, Percent_Identity=26.8085106382979, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320241, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653139, Length=252, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI20129971, Length=245, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24653477, Length=245, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI19922422, Length=248, Percent_Identity=24.5967741935484, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI19920382, Length=175, Percent_Identity=29.7142857142857, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 28021; Mature: 27889
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLNTTGLITTVEDGVAVITLDRPEVRNAFDDALIAALTRAYDAAAVDPQVYAVLLKANG CCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCC PTFCAGADLNWMRRMATYSRQENLADAMALATLMRTIDLCPKPTLVRVHGSAFAGATGLI CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHE AASDIVVAVPEAEFAITEVRIGLIPSVISPYLVRAMGARQARRYFLTAERFSAETALALG EECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVHEVVSAEELDAAIVRHLKALKAASPGAMAATKALIAAVDRPFDQTVLQDTARRIADQR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VSADGREGVSAFLEKRKPTWGAA CCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SLNTTGLITTVEDGVAVITLDRPEVRNAFDDALIAALTRAYDAAAVDPQVYAVLLKANG CCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCC PTFCAGADLNWMRRMATYSRQENLADAMALATLMRTIDLCPKPTLVRVHGSAFAGATGLI CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHE AASDIVVAVPEAEFAITEVRIGLIPSVISPYLVRAMGARQARRYFLTAERFSAETALALG EECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVHEVVSAEELDAAIVRHLKALKAASPGAMAATKALIAAVDRPFDQTVLQDTARRIADQR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VSADGREGVSAFLEKRKPTWGAA CCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA