| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yyaL [H]
Identifier: 154245776
GI number: 154245776
Start: 2058261
End: 2060270
Strand: Reverse
Name: yyaL [H]
Synonym: Xaut_1832
Alternate gene names: 154245776
Gene position: 2060270-2058261 (Counterclockwise)
Preceding gene: 154245782
Following gene: 154245770
Centisome position: 38.81
GC content: 68.21
Gene sequence:
>2010_bases ATGAGCGAGAACCGCCTCTCCCGCGAGACCAGCCCCTATCTGCTCCAGCACAAGGACAATCCGGTGCACTGGTGGGCGTG GGGGCCGGAGGCGTTCGCGGAGGCGCAGGCCACCGGCAAGCCCATCCTCCTCTCGGTCGGCTATGCGGCGTGCCACTGGT GCCATGTGATGGCCCACGAGAGCTTCGAGAATGCGGATGTGGCGGGGCTGATGAACGCCCTGTTTGTGAACATCAAGGTG GACCGGGAAGAGCGGCCGGACGTGGACCAGATCTACATGTCCGCGCTCCAGCAGCTGGGCCAGAGCGGCGGCTGGCCGCT TACCATGTTCCTCGATCCGGAAGGAAAGCCGTTCTGGGGCGGCACCTATTTTCCCCCTGCCGCGAGCTACGGCCGGCCCG GCTTCACCGACGTGCTGCAGCAGGTCTCCACCGTCTTCACCCAGAACAAGGACAAGGTGGAGAAGAACACCGCAACCATC CTCGCCCGGCTGAAGAAGGCCGCGACCCCCGTGGCCGGCGCCGCCATCGGCCGGGAAGATCTCAACGACGCCGCCGCGCG CCTGCCAGCCATGTTCGATCCGGTCCATGGCGGGCTGAAGGGGGCGCCGAAATTCCCCCAGTCGGGGCTTTTGGAATTCC TGTGGCGGGTGGGCACGCGGCGCAAGGACGACGCGCTGAAGGCCATCGTCGCCCTCACCCTCAACCGCATGTGCGAGGGC GGGATCTATGACCATCTGGGCGGGGGCTTTGCCCGCTATTCGGTGGACGAGATCTGGTTCGTCCCGCACTTCGAGAAGAT GCTCTACGACAACGCGCTGCTCCTGGAACTGCTGGCGCTGGCCTATTCCGACACCGGCGATGCGCTCTTCCTCACCCGCG CGCGGGAGACGGTGGGCTGGCTGAAGCGGGAGATGCTGACCCCCGAAGGCGCCTTCGCCGCGAGCCTCGATGCGGACACC GAGGGCCACGAAGGCCGCTTCTATGTGTGGAGCGAGGCCGAGATCACGGCCGTACTGGGGGCGGAGGACGCCGCCTTTTT CAACCGCCTCTATGATGTGAGCCGGGCCGGAAACTGGGAGGTGGGCAACATCCTCAACCGCACCGAGGCCGGCGTGGTGA GCGCCGAAGACGAGGCCCGCCTCGCCCCCCTGCGCGAAAAGCTGCTGCTGGCGCGGGAAAAACGGGTACGTCCGGGTCGG GACGACAAGGTGCTGGCGGACTGGAATGGCCTGATGATCGCGGCGCTGGCGCGGGCCGGCGGCTTCCTCGGCGAGGCCGA ATGGGTGGCGCTGGCGCAGCGCGCGTTCGATGCCGTGGTGAGCCACATGGTGGTGGAGGGGCGCCTTGCCCATTCCTGGT GCGGCACCAAGATCGTGCTGCCGGGCCTTGCCTCCGACCTCGCCGCCATGGCCCGCGCCGGCATCGCGCTCCATGAGGCG ACGGGTGCGCCCGAGCCGCTGGCCCAGGCCGCGCACTTCCTTGAGGTGCTGGAAACCCACCATCGCGACCCCGAGACCGG CGCCTATTTCCTCACGGCGTACGATGGTGACAGCCTCATCCTGCGGCCGTTGGCGACCCATGACGAGGCGGTGCCCAACG CCAATGCTGTGGCCGCCGATGCCCTCATCCGCCTCGCCGCCCTCACCGGAAATGACGCATTCAGGACCCGCGCGGACCGG GTGCTGACCGGCGTTTCCGGTGCAACGGCGAAGAATGTGCTGGCCCATGGCGCCACCCTGAACGCCATCGACACGCGCCT CGGCCTCGCCGAGATGGTGGCGGTGGGCGCCAACCGCGAGGCGCTGGCTGCAGCCGCGCTCAAGGTGCCATTCCCGCTTC GGGTGGTGGCGCGAGCGGGTGATGGGGTGGCATCCGGCAGCGTGATGGCGGCCCGCATCGCCTCTGCGCCAGCGGAAGGG GCGGCTTTTGTCTGCGTCGGGGAGCGCTGTTCGCTGCCGGTGAGCGATCCAGCCCAGATCGCGGCGGTGGTAGGCGAAAT GCTCTCTTGA
Upstream 100 bases:
>100_bases GCATCGGCAGATGGCGGACCATGCGTCCTTCATTGCCTGAATTTTTCGTCGCCATCTCCATTGCCACCAAAGCCGGCGTC AGCCGAGGGATTTTCAGATC
Downstream 100 bases:
>100_bases GGGGAAGTTTTTCCGGGCGGCGGGAGCGACCCATCTTCAGATCGCGTCAGAAAGCCTCCTACGGGAGGTTTTCTGCAGAT GAAGAATGGATCGAACCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 669; Mature: 668
Protein sequence:
>669_residues MSENRLSRETSPYLLQHKDNPVHWWAWGPEAFAEAQATGKPILLSVGYAACHWCHVMAHESFENADVAGLMNALFVNIKV DREERPDVDQIYMSALQQLGQSGGWPLTMFLDPEGKPFWGGTYFPPAASYGRPGFTDVLQQVSTVFTQNKDKVEKNTATI LARLKKAATPVAGAAIGREDLNDAAARLPAMFDPVHGGLKGAPKFPQSGLLEFLWRVGTRRKDDALKAIVALTLNRMCEG GIYDHLGGGFARYSVDEIWFVPHFEKMLYDNALLLELLALAYSDTGDALFLTRARETVGWLKREMLTPEGAFAASLDADT EGHEGRFYVWSEAEITAVLGAEDAAFFNRLYDVSRAGNWEVGNILNRTEAGVVSAEDEARLAPLREKLLLAREKRVRPGR DDKVLADWNGLMIAALARAGGFLGEAEWVALAQRAFDAVVSHMVVEGRLAHSWCGTKIVLPGLASDLAAMARAGIALHEA TGAPEPLAQAAHFLEVLETHHRDPETGAYFLTAYDGDSLILRPLATHDEAVPNANAVAADALIRLAALTGNDAFRTRADR VLTGVSGATAKNVLAHGATLNAIDTRLGLAEMVAVGANREALAAAALKVPFPLRVVARAGDGVASGSVMAARIASAPAEG AAFVCVGERCSLPVSDPAQIAAVVGEMLS
Sequences:
>Translated_669_residues MSENRLSRETSPYLLQHKDNPVHWWAWGPEAFAEAQATGKPILLSVGYAACHWCHVMAHESFENADVAGLMNALFVNIKV DREERPDVDQIYMSALQQLGQSGGWPLTMFLDPEGKPFWGGTYFPPAASYGRPGFTDVLQQVSTVFTQNKDKVEKNTATI LARLKKAATPVAGAAIGREDLNDAAARLPAMFDPVHGGLKGAPKFPQSGLLEFLWRVGTRRKDDALKAIVALTLNRMCEG GIYDHLGGGFARYSVDEIWFVPHFEKMLYDNALLLELLALAYSDTGDALFLTRARETVGWLKREMLTPEGAFAASLDADT EGHEGRFYVWSEAEITAVLGAEDAAFFNRLYDVSRAGNWEVGNILNRTEAGVVSAEDEARLAPLREKLLLAREKRVRPGR DDKVLADWNGLMIAALARAGGFLGEAEWVALAQRAFDAVVSHMVVEGRLAHSWCGTKIVLPGLASDLAAMARAGIALHEA TGAPEPLAQAAHFLEVLETHHRDPETGAYFLTAYDGDSLILRPLATHDEAVPNANAVAADALIRLAALTGNDAFRTRADR VLTGVSGATAKNVLAHGATLNAIDTRLGLAEMVAVGANREALAAAALKVPFPLRVVARAGDGVASGSVMAARIASAPAEG AAFVCVGERCSLPVSDPAQIAAVVGEMLS >Mature_668_residues SENRLSRETSPYLLQHKDNPVHWWAWGPEAFAEAQATGKPILLSVGYAACHWCHVMAHESFENADVAGLMNALFVNIKVD REERPDVDQIYMSALQQLGQSGGWPLTMFLDPEGKPFWGGTYFPPAASYGRPGFTDVLQQVSTVFTQNKDKVEKNTATIL ARLKKAATPVAGAAIGREDLNDAAARLPAMFDPVHGGLKGAPKFPQSGLLEFLWRVGTRRKDDALKAIVALTLNRMCEGG IYDHLGGGFARYSVDEIWFVPHFEKMLYDNALLLELLALAYSDTGDALFLTRARETVGWLKREMLTPEGAFAASLDADTE GHEGRFYVWSEAEITAVLGAEDAAFFNRLYDVSRAGNWEVGNILNRTEAGVVSAEDEARLAPLREKLLLAREKRVRPGRD DKVLADWNGLMIAALARAGGFLGEAEWVALAQRAFDAVVSHMVVEGRLAHSWCGTKIVLPGLASDLAAMARAGIALHEAT GAPEPLAQAAHFLEVLETHHRDPETGAYFLTAYDGDSLILRPLATHDEAVPNANAVAADALIRLAALTGNDAFRTRADRV LTGVSGATAKNVLAHGATLNAIDTRLGLAEMVAVGANREALAAAALKVPFPLRVVARAGDGVASGSVMAARIASAPAEGA AFVCVGERCSLPVSDPAQIAAVVGEMLS
Specific function: Unknown
COG id: COG1331
COG function: function code O; Highly conserved protein containing a thioredoxin domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To C.elegans B0495.5 [H]
Homologues:
Organism=Homo sapiens, GI31542723, Length=728, Percent_Identity=33.2417582417582, Blast_Score=353, Evalue=3e-97, Organism=Caenorhabditis elegans, GI25147430, Length=708, Percent_Identity=30.9322033898305, Blast_Score=313, Evalue=2e-85, Organism=Drosophila melanogaster, GI20129985, Length=722, Percent_Identity=32.1329639889197, Blast_Score=347, Evalue=2e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR010819 - InterPro: IPR004879 - InterPro: IPR005198 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03190 DUF255; PF07221 GlcNAc_2-epim; PF03663 Glyco_hydro_76 [H]
EC number: NA
Molecular weight: Translated: 71864; Mature: 71733
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENRLSRETSPYLLQHKDNPVHWWAWGPEAFAEAQATGKPILLSVGYAACHWCHVMAHE CCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHC SFENADVAGLMNALFVNIKVDREERPDVDQIYMSALQQLGQSGGWPLTMFLDPEGKPFWG CCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC GTYFPPAASYGRPGFTDVLQQVSTVFTQNKDKVEKNTATILARLKKAATPVAGAAIGRED CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHH LNDAAARLPAMFDPVHGGLKGAPKFPQSGLLEFLWRVGTRRKDDALKAIVALTLNRMCEG HHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC GIYDHLGGGFARYSVDEIWFVPHFEKMLYDNALLLELLALAYSDTGDALFLTRARETVGW CCHHHCCCCEEECCCCCEEECCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHH LKREMLTPEGAFAASLDADTEGHEGRFYVWSEAEITAVLGAEDAAFFNRLYDVSRAGNWE HHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCC VGNILNRTEAGVVSAEDEARLAPLREKLLLAREKRVRPGRDDKVLADWNGLMIAALARAG HHHHHCHHHCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHC GFLGEAEWVALAQRAFDAVVSHMVVEGRLAHSWCGTKIVLPGLASDLAAMARAGIALHEA CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCCHHHHHHHHHHCCCEEECC TGAPEPLAQAAHFLEVLETHHRDPETGAYFLTAYDGDSLILRPLATHDEAVPNANAVAAD CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCHHHHH ALIRLAALTGNDAFRTRADRVLTGVSGATAKNVLAHGATLNAIDTRLGLAEMVAVGANRE HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH ALAAAALKVPFPLRVVARAGDGVASGSVMAARIASAPAEGAAFVCVGERCSLPVSDPAQI HHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHH AAVVGEMLS HHHHHHHCC >Mature Secondary Structure SENRLSRETSPYLLQHKDNPVHWWAWGPEAFAEAQATGKPILLSVGYAACHWCHVMAHE CCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHC SFENADVAGLMNALFVNIKVDREERPDVDQIYMSALQQLGQSGGWPLTMFLDPEGKPFWG CCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC GTYFPPAASYGRPGFTDVLQQVSTVFTQNKDKVEKNTATILARLKKAATPVAGAAIGRED CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHH LNDAAARLPAMFDPVHGGLKGAPKFPQSGLLEFLWRVGTRRKDDALKAIVALTLNRMCEG HHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC GIYDHLGGGFARYSVDEIWFVPHFEKMLYDNALLLELLALAYSDTGDALFLTRARETVGW CCHHHCCCCEEECCCCCEEECCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHH LKREMLTPEGAFAASLDADTEGHEGRFYVWSEAEITAVLGAEDAAFFNRLYDVSRAGNWE HHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCC VGNILNRTEAGVVSAEDEARLAPLREKLLLAREKRVRPGRDDKVLADWNGLMIAALARAG HHHHHCHHHCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHC GFLGEAEWVALAQRAFDAVVSHMVVEGRLAHSWCGTKIVLPGLASDLAAMARAGIALHEA CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCCHHHHHHHHHHCCCEEECC TGAPEPLAQAAHFLEVLETHHRDPETGAYFLTAYDGDSLILRPLATHDEAVPNANAVAAD CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCHHHHH ALIRLAALTGNDAFRTRADRVLTGVSGATAKNVLAHGATLNAIDTRLGLAEMVAVGANRE HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH ALAAAALKVPFPLRVVARAGDGVASGSVMAARIASAPAEGAAFVCVGERCSLPVSDPAQI HHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHH AAVVGEMLS HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]