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The map label for this gene is algU [H]

Identifier: 154245541

GI number: 154245541

Start: 1804995

End: 1805540

Strand: Reverse

Name: algU [H]

Synonym: Xaut_1595

Alternate gene names: 154245541

Gene position: 1805540-1804995 (Counterclockwise)

Preceding gene: 154245544

Following gene: 154245540

Centisome position: 34.01

GC content: 73.99

Gene sequence:

>546_bases
ATGCGCGAGGCGAGCGACGAGGACCTCATGGCACGCGTGGCCACCGCCGACGCGGCAGCCTTCCGGACGCTCTGCGACCG
GCATGCGGCGCGCGCCGCCGGCTTCGCCCGGCGCTTCCTGGGCGATGCGCAGGACGCGGAGGACATCGCCCAGGAGGCCC
TGCTTCGGGTCTGGCGCGCCGCACCGCGCTGGCGCCCCACGGCGGCCTTCGGCACGTGGCTCTATCGCATCGTGGTCAAT
CTCTGCCTCAACCACCGGCGGAAGGCCCGCTTCCTGCCCCTCGACGGGACCGAGGAGGCCGCCGACCCGGCGCCGGACGC
CCTCGCGCGCATGGAGCGCCGGGAGGATGACCTCGGGCTTTGGGCCGCGGTCGCCGATTTGCCCGAGCGGCAGCGCGCAG
CCATCCTGCTCACCTATTGGGAGGGTCTCTCCAATGCGCGCGTGGCCGACATCCTCGGCACCTCGGTTCCCGGGGTGGAA
ACCCTGCTGGTGCGGGCGCGGCGGAGCCTGCGCGGCCGCCTCGGCCCGCACCAGAACGGAGGATGA

Upstream 100 bases:

>100_bases
GCAGCCGGGCGGGCGCCCGCCCTGGGACGGGGCGACCGATTGAGGGAGAGCGCACCATGGTGGCATGTTGCGGGGATGGG
AGGCGGGTTCGAATACGCCC

Downstream 100 bases:

>100_bases
GGCATGACGCGCGCGGAACTCGAACGGCTGATCGCCCGCCACGGCGCGGACCGCGCCCTCTGGCCCGCAGGCGTCCGGCA
GGATGCCGAACGGCTGGCGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MREASDEDLMARVATADAAAFRTLCDRHAARAAGFARRFLGDAQDAEDIAQEALLRVWRAAPRWRPTAAFGTWLYRIVVN
LCLNHRRKARFLPLDGTEEAADPAPDALARMERREDDLGLWAAVADLPERQRAAILLTYWEGLSNARVADILGTSVPGVE
TLLVRARRSLRGRLGPHQNGG

Sequences:

>Translated_181_residues
MREASDEDLMARVATADAAAFRTLCDRHAARAAGFARRFLGDAQDAEDIAQEALLRVWRAAPRWRPTAAFGTWLYRIVVN
LCLNHRRKARFLPLDGTEEAADPAPDALARMERREDDLGLWAAVADLPERQRAAILLTYWEGLSNARVADILGTSVPGVE
TLLVRARRSLRGRLGPHQNGG
>Mature_181_residues
MREASDEDLMARVATADAAAFRTLCDRHAARAAGFARRFLGDAQDAEDIAQEALLRVWRAAPRWRPTAAFGTWLYRIVVN
LCLNHRRKARFLPLDGTEEAADPAPDALARMERREDDLGLWAAVADLPERQRAAILLTYWEGLSNARVADILGTSVPGVE
TLLVRARRSLRGRLGPHQNGG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=185, Percent_Identity=29.1891891891892, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20082; Mature: 20082

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREASDEDLMARVATADAAAFRTLCDRHAARAAGFARRFLGDAQDAEDIAQEALLRVWRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
APRWRPTAAFGTWLYRIVVNLCLNHRRKARFLPLDGTEEAADPAPDALARMERREDDLGL
CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
WAAVADLPERQRAAILLTYWEGLSNARVADILGTSVPGVETLLVRARRSLRGRLGPHQNG
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
G
C
>Mature Secondary Structure
MREASDEDLMARVATADAAAFRTLCDRHAARAAGFARRFLGDAQDAEDIAQEALLRVWRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
APRWRPTAAFGTWLYRIVVNLCLNHRRKARFLPLDGTEEAADPAPDALARMERREDDLGL
CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
WAAVADLPERQRAAILLTYWEGLSNARVADILGTSVPGVETLLVRARRSLRGRLGPHQNG
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]