Click here to switch to the map view.

The map label for this gene is rpsU1 [H]

Identifier: 154245493

GI number: 154245493

Start: 1757495

End: 1757830

Strand: Reverse

Name: rpsU1 [H]

Synonym: Xaut_1546

Alternate gene names: 154245493

Gene position: 1757830-1757495 (Counterclockwise)

Preceding gene: 154245494

Following gene: 154245492

Centisome position: 33.11

GC content: 66.07

Gene sequence:

>336_bases
ATGATGCCGGGAGCCCTCGAGCGAGCGGTCGCGTTGCGGCCGGGGATTCGCGGCAACCCTCAGATTGGAACCGTTTTGCA
GGTACTCGTCAGAGACAACAATATCGAACAGGCCCTGAAAGTCCTGAAGAAGCGCATGCAGCGGGAAGGCATTTTCCGCG
AGATGAAGCAGCGCAAGGCGTATGAGAAGCCCTCCGAGCGCCGTGTCCGCGAAGCGGCCGAAGCCGTGCGGCGCACCCGC
AAGGCTGCGCGCAAGAAGGCCCAGCGCGAAGGTCTCATCGCCGCGCCGAAGCGGACCCTGAAGCCCCGGCCTGGTGCTGC
CCCCGCGCCGCGCTGA

Upstream 100 bases:

>100_bases
ATCGGGCCCATCTGCCGCCGGCGATCATCGGAATGCACGGATAAATCGTGCGCCGATGCGGTAAATCGCGGCACATGTGC
TAAGACGCCCACTTTCCGGT

Downstream 100 bases:

>100_bases
TACCGTTGCCTTTCGGGCCGGATCCCGATCCGGCCCGCCACTCGCGGCTCCTCCCCCGCAAGAGCACTCCCCCCAAGCGC
GCCCCGAACGCCCCACCTGC

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MMPGALERAVALRPGIRGNPQIGTVLQVLVRDNNIEQALKVLKKRMQREGIFREMKQRKAYEKPSERRVREAAEAVRRTR
KAARKKAQREGLIAAPKRTLKPRPGAAPAPR

Sequences:

>Translated_111_residues
MMPGALERAVALRPGIRGNPQIGTVLQVLVRDNNIEQALKVLKKRMQREGIFREMKQRKAYEKPSERRVREAAEAVRRTR
KAARKKAQREGLIAAPKRTLKPRPGAAPAPR
>Mature_111_residues
MMPGALERAVALRPGIRGNPQIGTVLQVLVRDNNIEQALKVLKKRMQREGIFREMKQRKAYEKPSERRVREAAEAVRRTR
KAARKKAQREGLIAAPKRTLKPRPGAAPAPR

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001911
- ProDom:   PD005521 [H]

Pfam domain/function: PF01165 Ribosomal_S21 [H]

EC number: NA

Molecular weight: Translated: 12585; Mature: 12585

Theoretical pI: Translated: 12.30; Mature: 12.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPGALERAVALRPGIRGNPQIGTVLQVLVRDNNIEQALKVLKKRMQREGIFREMKQRKA
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YEKPSERRVREAAEAVRRTRKAARKKAQREGLIAAPKRTLKPRPGAAPAPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMPGALERAVALRPGIRGNPQIGTVLQVLVRDNNIEQALKVLKKRMQREGIFREMKQRKA
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YEKPSERRVREAAEAVRRTRKAARKKAQREGLIAAPKRTLKPRPGAAPAPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]