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The map label for this gene is agmR [H]

Identifier: 154245397

GI number: 154245397

Start: 1664260

End: 1664934

Strand: Reverse

Name: agmR [H]

Synonym: Xaut_1450

Alternate gene names: 154245397

Gene position: 1664934-1664260 (Counterclockwise)

Preceding gene: 154245398

Following gene: 154245396

Centisome position: 31.36

GC content: 67.85

Gene sequence:

>675_bases
TTGGGAGAAGCCGCCGGGGGCAGCCTGCGCCTCGTAATCGCCGACGACCACCCCCTGTTCCGCGGCGCCCTGCGCGAGGC
GGTGCTTGGACGTCATGCCGACGCCACCATCGAGGAGGTGGGCACCTTCGACGACCTCACCGCGTTGCTGGAACGCGACC
GCGATTTCGACCTGATCCTGCTCGACCTCACCATGCCGGGGGCGCGGGGCTTCTCGGGTCTCATCTATCTGCGCGCCCAA
TACACCAGCCTGCCGGTGGTGGTGGTATCGGGAAACGAAGAGACCGCCGTCATCCGCCGCTGCATCGACCTCGGCGCCTC
GGGCTTCATTCCCAAGACCATGAGCGTCGCCGACATGCGCGATGCGGTGGCAAGCGTGCTCGGGGGCGAGGCCTTCGTGC
CGTCGGACATCAGCCTCGGTGCCCGGGCCGACGCGGAGACGGACGCCATCATCGCCCGCCTCGCCACCCTGACGCCCCAG
CAGGTGCGGGTGCTGATGATGCTGTCCGAAGGCCGGCTCAACAAGCAGATCGCCTATGAGCTGAGCGTCTCCGAGGCGAC
GGTGAAGGCCCACGTCTCCGCCATCCTGCAGAAGCTCGGCGTGGAAAGCCGCACCCAGGCCGTTATCGCGGTGTCGAAGG
TTGAAGCCGGGCTCTGGAGCCAGTCGCAGGCCTGA

Upstream 100 bases:

>100_bases
TGTCACCGCTTCGCCACGGATTGATGATCGGGCGAGCCGATTCGCGGTGGGCGCCGTCCTCCCGCGAAGACAAGAAGGGC
GGAGCCGCCGGGAGGGAGCA

Downstream 100 bases:

>100_bases
CGGTATTGGCCTGACGGTGTCCGCCGCCCCGGTAGGGACCTTTTCACCGGTCACGGTCTAAAGCTCGTCGGGACAGGTCG
GGCGTGTTCCCCGCGACCGC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MGEAAGGSLRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRDFDLILLDLTMPGARGFSGLIYLRAQ
YTSLPVVVVSGNEETAVIRRCIDLGASGFIPKTMSVADMRDAVASVLGGEAFVPSDISLGARADAETDAIIARLATLTPQ
QVRVLMMLSEGRLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAVSKVEAGLWSQSQA

Sequences:

>Translated_224_residues
MGEAAGGSLRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRDFDLILLDLTMPGARGFSGLIYLRAQ
YTSLPVVVVSGNEETAVIRRCIDLGASGFIPKTMSVADMRDAVASVLGGEAFVPSDISLGARADAETDAIIARLATLTPQ
QVRVLMMLSEGRLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAVSKVEAGLWSQSQA
>Mature_223_residues
GEAAGGSLRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRDFDLILLDLTMPGARGFSGLIYLRAQY
TSLPVVVVSGNEETAVIRRCIDLGASGFIPKTMSVADMRDAVASVLGGEAFVPSDISLGARADAETDAIIARLATLTPQQ
VRVLMMLSEGRLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAVSKVEAGLWSQSQA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=195, Percent_Identity=31.7948717948718, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788546, Length=209, Percent_Identity=27.7511961722488, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=30.6930693069307, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=24.8730964467005, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=21.025641025641, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=32.5471698113208, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23850; Mature: 23718

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEAAGGSLRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRDFDLIL
CCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEE
LDLTMPGARGFSGLIYLRAQYTSLPVVVVSGNEETAVIRRCIDLGASGFIPKTMSVADMR
EEEECCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
DAVASVLGGEAFVPSDISLGARADAETDAIIARLATLTPQQVRVLMMLSEGRLNKQIAYE
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHEEEEEECCCCCCCEEEEE
LSVSEATVKAHVSAILQKLGVESRTQAVIAVSKVEAGLWSQSQA
EECCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHCCCCCCCC
>Mature Secondary Structure 
GEAAGGSLRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRDFDLIL
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEE
LDLTMPGARGFSGLIYLRAQYTSLPVVVVSGNEETAVIRRCIDLGASGFIPKTMSVADMR
EEEECCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
DAVASVLGGEAFVPSDISLGARADAETDAIIARLATLTPQQVRVLMMLSEGRLNKQIAYE
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHEEEEEECCCCCCCEEEEE
LSVSEATVKAHVSAILQKLGVESRTQAVIAVSKVEAGLWSQSQA
EECCHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]