| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is dhfrIII [H]
Identifier: 154245367
GI number: 154245367
Start: 1623989
End: 1624525
Strand: Direct
Name: dhfrIII [H]
Synonym: Xaut_1420
Alternate gene names: 154245367
Gene position: 1623989-1624525 (Clockwise)
Preceding gene: 154245366
Following gene: 154245370
Centisome position: 30.59
GC content: 70.2
Gene sequence:
>537_bases ATGACCCCCGGCCAGCCGCTCCGCCATCCTCTGGCCCTCGTGGTCGCGGTGTCGCAGAACGGGGTGATCGGCACCGACGG CGGTCTGCCGTGGCGCCTGCCCTCGGACCTCAAGCGATTTCGCGCGCTCACCTGGGGCAAGCCGCTCCTCATGGGCCGGC GCACCTACGAGTCCATCGGCCGTCCGCTGCCGGGGCGCACGTCCGTGGTGGTCAGCACCGATCCCGCCTTCACGGTGCCG GAAGGAGTGCTGAAGGGGGCAAGCCTGGAGGACGGACTGCGCCTCGCCGATGAGGCGGCGGACGCCATGGGCGCGGATGA GATCATGGTCATCGGCGGCGCCCGCCTGTTCCATGACACGCTGCCACTCGCCCGCACGCTGCATCTCACGCAGGTCCATG CGGCACCTGATGGCGATGTCTTCTTCCCTGCGTTCGATGAGGCCCAATGGCGCGAGATCGCGCGGGACGGCCCGATCCAG GGCGAGAAGGACGAAGCCGCCTTCACCGCTCTGACGCTGGTGCGCGCCGGCGGCTGA
Upstream 100 bases:
>100_bases GAGGCTTTTTCCACCTGCCACGGCGCCCACCTCAGCGGCCTTGCCGCCGCCGATGCGGCCCTCGCCGCCCTGAACAGCGA CCGATGATGGAGATCGCCTC
Downstream 100 bases:
>100_bases AGCCGGCCTTCGTTTTCGACCGACGCTGAAGGAATACGCGAGGCTCGGCTGGTGGCGTCCGGACGCGTCCGGCCGAGCCT CGCGATTTTCGGTGCTTCTA
Product: dihydrofolate reductase
Products: NA
Alternate protein names: Dihydrofolate reductase type III [H]
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MTPGQPLRHPLALVVAVSQNGVIGTDGGLPWRLPSDLKRFRALTWGKPLLMGRRTYESIGRPLPGRTSVVVSTDPAFTVP EGVLKGASLEDGLRLADEAADAMGADEIMVIGGARLFHDTLPLARTLHLTQVHAAPDGDVFFPAFDEAQWREIARDGPIQ GEKDEAAFTALTLVRAGG
Sequences:
>Translated_178_residues MTPGQPLRHPLALVVAVSQNGVIGTDGGLPWRLPSDLKRFRALTWGKPLLMGRRTYESIGRPLPGRTSVVVSTDPAFTVP EGVLKGASLEDGLRLADEAADAMGADEIMVIGGARLFHDTLPLARTLHLTQVHAAPDGDVFFPAFDEAQWREIARDGPIQ GEKDEAAFTALTLVRAGG >Mature_177_residues TPGQPLRHPLALVVAVSQNGVIGTDGGLPWRLPSDLKRFRALTWGKPLLMGRRTYESIGRPLPGRTSVVVSTDPAFTVPE GVLKGASLEDGLRLADEAADAMGADEIMVIGGARLFHDTLPLARTLHLTQVHAAPDGDVFFPAFDEAQWREIARDGPIQG EKDEAAFTALTLVRAGG
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Homo sapiens, GI4503323, Length=155, Percent_Identity=31.6129032258064, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI1786233, Length=144, Percent_Identity=39.5833333333333, Blast_Score=110, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17505899, Length=168, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=3e-13, Organism=Drosophila melanogaster, GI116008026, Length=160, Percent_Identity=33.125, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI24647458, Length=160, Percent_Identity=33.125, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 19029; Mature: 18898
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS00075 DHFR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPGQPLRHPLALVVAVSQNGVIGTDGGLPWRLPSDLKRFRALTWGKPLLMGRRTYESIG CCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHC RPLPGRTSVVVSTDPAFTVPEGVLKGASLEDGLRLADEAADAMGADEIMVIGGARLFHDT CCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH LPLARTLHLTQVHAAPDGDVFFPAFDEAQWREIARDGPIQGEKDEAAFTALTLVRAGG HHHHHHEEEEEEECCCCCCEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHEEEECCC >Mature Secondary Structure TPGQPLRHPLALVVAVSQNGVIGTDGGLPWRLPSDLKRFRALTWGKPLLMGRRTYESIG CCCCCCCCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCHHHHHHC RPLPGRTSVVVSTDPAFTVPEGVLKGASLEDGLRLADEAADAMGADEIMVIGGARLFHDT CCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH LPLARTLHLTQVHAAPDGDVFFPAFDEAQWREIARDGPIQGEKDEAAFTALTLVRAGG HHHHHHEEEEEEECCCCCCEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840679; 6371010 [H]