Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 154245296

GI number: 154245296

Start: 1550664

End: 1551806

Strand: Direct

Name: yfdE [H]

Synonym: Xaut_1349

Alternate gene names: 154245296

Gene position: 1550664-1551806 (Clockwise)

Preceding gene: 154245291

Following gene: 154245297

Centisome position: 29.21

GC content: 67.63

Gene sequence:

>1143_bases
ATGCATCGTGATCTCGAAGGTATGCTCGTCGTCTCGGTGGAGCAGGCCGTTGCCGCGCCCTACCTCTCAGGCCGACTGGC
GGACGCGGGGGCGCGCGTCATCAAGGTCGAACGCCCCGAAGGGGATTTCGCGCGCAATTACGACAGCCTCGTCCATGGCG
AGAGCGCCTATTTCGTCTGGTTGAACCGGGGCAAGGAATCCATTTGCCTCGACCTGAAGGAGCGCGGCGACGCGGACCTG
CTCGCCGCCCTGCTCGAGAAGGCCGACATCTTCATCCAGAACCTCGCGCCGGGGGTGATCGAGCGGCTCGGCTTTGCCCC
CGATGACCTGCGCCGGCGCAATCCGCGCCTCATCACCTGCTCCATTTCCGGCTATGGCGACGAAGGGCCCTACCGCGACC
TCAAGGCCTACGATCTTCTGGTTCAGGCCGAGAGCGGCCTCTCTTCTCTCACGGGCAACGAGGCGGGGCTGGCGCGGGTC
GGGGTGTCGGTGTGCGACATCGCGGCGGGGATGACCGCGTTCCAGGCGGTGCTGCAGGCGATCATCGGCCGGGAGCGCAC
CGGCGTGGGGCGCCATGTCTCCGTCTCGCTCTATCATGCGCTGTCCGACTGGATGAACGTGCCGTACCTCCAGTTCGCCT
ATGGCGGCAAGGTCCCGGTGCGCGCGGGCCTCAGCCATCCCACCATCGCGCCCTATGGGGCTTTTGAGTGCGCCGACGGC
AAGGCGGTTCTCCTCTCCATCCAGAACGAGCGCGAATGGGTGAATTTCTGCGCCGACGTGCTCGGGGACGCGGCCCTCGC
CACCGATCCGCGCTGGACCAGCAACAGCCTGCGGGTGGAGAACCGGCCGGCGCTGGAGGCGGCGGTCACGGCGGTGTTCC
GCGTCCATCCGCGCGACGAGATGGTGGCGCGCCTGGAAAAGGGGCGGATCGCCTATGGCCGGGTCAGCACCATGGAGGAC
ATGTTGGTCCATCCGCAGAACCGCTATGTGGAGGTCGATACGCCGACCGGGCCGGTGCGGTGCCTGGCGCCGGGGGCGCT
GTTCGACCGGACCTTGCCGCGCTTCGGACCGGTGCCGGCTTTGGGGGCGCATACGGACGCCATTCGCGGTGAGTTCGCCA
TGCACGCGCGTGCCGACACATAA

Upstream 100 bases:

>100_bases
CACGGCGATCTTGCCGAGGAAGAGCCTCGGTCGAGGCGCAGACGGCGTCTGCACCGGCCGGCGAGGTTTCCCCGTCGCCA
CTCAGTCCGCCGGTGTTTCG

Downstream 100 bases:

>100_bases
GGAGGCCGGACATGTCGTTCCCTGATGCCGGTCCTGCGGATGAGGCGCCCCGCGTGCGCCGTCCTGCCGGCAGCGCGCTC
GCGCTGATCGAAGAGTGGCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MHRDLEGMLVVSVEQAVAAPYLSGRLADAGARVIKVERPEGDFARNYDSLVHGESAYFVWLNRGKESICLDLKERGDADL
LAALLEKADIFIQNLAPGVIERLGFAPDDLRRRNPRLITCSISGYGDEGPYRDLKAYDLLVQAESGLSSLTGNEAGLARV
GVSVCDIAAGMTAFQAVLQAIIGRERTGVGRHVSVSLYHALSDWMNVPYLQFAYGGKVPVRAGLSHPTIAPYGAFECADG
KAVLLSIQNEREWVNFCADVLGDAALATDPRWTSNSLRVENRPALEAAVTAVFRVHPRDEMVARLEKGRIAYGRVSTMED
MLVHPQNRYVEVDTPTGPVRCLAPGALFDRTLPRFGPVPALGAHTDAIRGEFAMHARADT

Sequences:

>Translated_380_residues
MHRDLEGMLVVSVEQAVAAPYLSGRLADAGARVIKVERPEGDFARNYDSLVHGESAYFVWLNRGKESICLDLKERGDADL
LAALLEKADIFIQNLAPGVIERLGFAPDDLRRRNPRLITCSISGYGDEGPYRDLKAYDLLVQAESGLSSLTGNEAGLARV
GVSVCDIAAGMTAFQAVLQAIIGRERTGVGRHVSVSLYHALSDWMNVPYLQFAYGGKVPVRAGLSHPTIAPYGAFECADG
KAVLLSIQNEREWVNFCADVLGDAALATDPRWTSNSLRVENRPALEAAVTAVFRVHPRDEMVARLEKGRIAYGRVSTMED
MLVHPQNRYVEVDTPTGPVRCLAPGALFDRTLPRFGPVPALGAHTDAIRGEFAMHARADT
>Mature_380_residues
MHRDLEGMLVVSVEQAVAAPYLSGRLADAGARVIKVERPEGDFARNYDSLVHGESAYFVWLNRGKESICLDLKERGDADL
LAALLEKADIFIQNLAPGVIERLGFAPDDLRRRNPRLITCSISGYGDEGPYRDLKAYDLLVQAESGLSSLTGNEAGLARV
GVSVCDIAAGMTAFQAVLQAIIGRERTGVGRHVSVSLYHALSDWMNVPYLQFAYGGKVPVRAGLSHPTIAPYGAFECADG
KAVLLSIQNEREWVNFCADVLGDAALATDPRWTSNSLRVENRPALEAAVTAVFRVHPRDEMVARLEKGRIAYGRVSTMED
MLVHPQNRYVEVDTPTGPVRCLAPGALFDRTLPRFGPVPALGAHTDAIRGEFAMHARADT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=29.8941798941799, Blast_Score=181, Evalue=8e-46,
Organism=Homo sapiens, GI300863124, Length=328, Percent_Identity=30.7926829268293, Blast_Score=175, Evalue=6e-44,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=26.790450928382, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI13376042, Length=328, Percent_Identity=28.0487804878049, Blast_Score=138, Evalue=7e-33,
Organism=Homo sapiens, GI266456254, Length=392, Percent_Identity=25.765306122449, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=26.2755102040816, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI266458397, Length=195, Percent_Identity=31.7948717948718, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI266458393, Length=195, Percent_Identity=31.7948717948718, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=35.9154929577465, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=35.9154929577465, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=378, Percent_Identity=32.2751322751323, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1788717, Length=402, Percent_Identity=28.8557213930348, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786222, Length=332, Percent_Identity=25.3012048192771, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=191, Percent_Identity=28.7958115183246, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24648431, Length=387, Percent_Identity=32.5581395348837, Blast_Score=178, Evalue=6e-45,
Organism=Drosophila melanogaster, GI24585488, Length=208, Percent_Identity=29.3269230769231, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41372; Mature: 41372

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRDLEGMLVVSVEQAVAAPYLSGRLADAGARVIKVERPEGDFARNYDSLVHGESAYFVW
CCCCCCCEEEEEEHHHHHCHHHCCEECCCCCEEEEEECCCCCHHHCHHHHHCCCCEEEEE
LNRGKESICLDLKERGDADLLAALLEKADIFIQNLAPGVIERLGFAPDDLRRRNPRLITC
EECCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCEEEEE
SISGYGDEGPYRDLKAYDLLVQAESGLSSLTGNEAGLARVGVSVCDIAAGMTAFQAVLQA
EECCCCCCCCCCCHHHHEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIGRERTGVGRHVSVSLYHALSDWMNVPYLQFAYGGKVPVRAGLSHPTIAPYGAFECADG
HHCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCEEECCC
KAVLLSIQNEREWVNFCADVLGDAALATDPRWTSNSLRVENRPALEAAVTAVFRVHPRDE
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHEECCHHH
MVARLEKGRIAYGRVSTMEDMLVHPQNRYVEVDTPTGPVRCLAPGALFDRTLPRFGPVPA
HHHHHHCCCEEECCHHHHHHHHCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCCCCCCC
LGAHTDAIRGEFAMHARADT
CCCCCHHHCCCEEEEECCCC
>Mature Secondary Structure
MHRDLEGMLVVSVEQAVAAPYLSGRLADAGARVIKVERPEGDFARNYDSLVHGESAYFVW
CCCCCCCEEEEEEHHHHHCHHHCCEECCCCCEEEEEECCCCCHHHCHHHHHCCCCEEEEE
LNRGKESICLDLKERGDADLLAALLEKADIFIQNLAPGVIERLGFAPDDLRRRNPRLITC
EECCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCEEEEE
SISGYGDEGPYRDLKAYDLLVQAESGLSSLTGNEAGLARVGVSVCDIAAGMTAFQAVLQA
EECCCCCCCCCCCHHHHEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIGRERTGVGRHVSVSLYHALSDWMNVPYLQFAYGGKVPVRAGLSHPTIAPYGAFECADG
HHCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCEEECCC
KAVLLSIQNEREWVNFCADVLGDAALATDPRWTSNSLRVENRPALEAAVTAVFRVHPRDE
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHEECCHHH
MVARLEKGRIAYGRVSTMEDMLVHPQNRYVEVDTPTGPVRCLAPGALFDRTLPRFGPVPA
HHHHHHCCCEEECCHHHHHHHHCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCCCCCCC
LGAHTDAIRGEFAMHARADT
CCCCCHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]