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The map label for this gene is phnF [C]

Identifier: 154245265

GI number: 154245265

Start: 1512320

End: 1513135

Strand: Direct

Name: phnF [C]

Synonym: Xaut_1317

Alternate gene names: 154245265

Gene position: 1512320-1513135 (Clockwise)

Preceding gene: 154245256

Following gene: 154245266

Centisome position: 28.49

GC content: 71.57

Gene sequence:

>816_bases
ATGTCGGGGACGTCGCGCAGTCTCTCAACCAAGGGTCACAACCCGATGACGGAGGCGACGCAAACCAAGGCGGACGGCGG
TGCGTCCGGGCACGAGGGCGTGGCCCGCGGATCGGGCGTCACCCTGTGGCGGCAGATCGCCCAGCGGTTGGAGGAGGAGA
TCCATTCCGGCGTCCTGAAGCCCGGCGCGCGCCTGCCGGTGGAGGCGGAGCTGTCCGAGACCTTCGGGGTCAACCGCCAC
ACCCTGCGCCGGGCGCTGGCGCATCTGGCCGAGCAGGGGCTCATCGAGGCCACGGCCGGGCGCGGCACCTTCGTGAAGGA
GCCGCCCCTGCGCTATCCCATCGGCGCGCGCACCCGCTTCTCGGAGATCGTCTCGGCGGGCGGGCGCGAGCCGTTTGGCC
GCTTCCTCGGCTCGAAGGTGGAAGATGCCTGCCCGGACGTGGCGCGGGAACTGGCCGTGCCCGAGGGCACGCCGGTGCTG
CGCATCGAGAGCATCCACGAGGCGGACGGGGTGCCCATCTCGTTCGGCACCGCGTGGTTTCCCCACGCGCGCTTACGCGA
CCTCGACCTCGTCTATGCTGCCACCGGCTCGCTGACGCGGGCGCTCGCCACCCTCGGCATCGAGGATTATCGCCGCCGCG
AGACCCGCATCACCGCGCGCCCCGCCAATGGGCGGGAAATCGAGCTGCTGTCGCTCGCCCCCGGCCGCGCGGTGCTGGTT
CTGGAGCGGCTCGACGTGGAGCCGAACGGCGTGCCTCTGCAATGGGGCCGTTCCTCCTTCGCGGCGGACCGGGTGCAACT
GGTGTTCAAGGCGTGA

Upstream 100 bases:

>100_bases
AGGCGCGCGGAAGGATACGGGAACCGAGGCTCCGCTGGACTCTATTTATATAATAGTCTAGACAAATAGACAAGACGGCG
AGGCCGTCAGGGAGGCGGAA

Downstream 100 bases:

>100_bases
GCGCATCCGCGCCGGTGGCGGTGCGCGGCAAGCTCTTCAGGACAGCGTAAGGACGACCCCATGGCCGAGATTCGAGACGA
AGACGCGCTCCGTTGCCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSGTSRSLSTKGHNPMTEATQTKADGGASGHEGVARGSGVTLWRQIAQRLEEEIHSGVLKPGARLPVEAELSETFGVNRH
TLRRALAHLAEQGLIEATAGRGTFVKEPPLRYPIGARTRFSEIVSAGGREPFGRFLGSKVEDACPDVARELAVPEGTPVL
RIESIHEADGVPISFGTAWFPHARLRDLDLVYAATGSLTRALATLGIEDYRRRETRITARPANGREIELLSLAPGRAVLV
LERLDVEPNGVPLQWGRSSFAADRVQLVFKA

Sequences:

>Translated_271_residues
MSGTSRSLSTKGHNPMTEATQTKADGGASGHEGVARGSGVTLWRQIAQRLEEEIHSGVLKPGARLPVEAELSETFGVNRH
TLRRALAHLAEQGLIEATAGRGTFVKEPPLRYPIGARTRFSEIVSAGGREPFGRFLGSKVEDACPDVARELAVPEGTPVL
RIESIHEADGVPISFGTAWFPHARLRDLDLVYAATGSLTRALATLGIEDYRRRETRITARPANGREIELLSLAPGRAVLV
LERLDVEPNGVPLQWGRSSFAADRVQLVFKA
>Mature_270_residues
SGTSRSLSTKGHNPMTEATQTKADGGASGHEGVARGSGVTLWRQIAQRLEEEIHSGVLKPGARLPVEAELSETFGVNRHT
LRRALAHLAEQGLIEATAGRGTFVKEPPLRYPIGARTRFSEIVSAGGREPFGRFLGSKVEDACPDVARELAVPEGTPVLR
IESIHEADGVPISFGTAWFPHARLRDLDLVYAATGSLTRALATLGIEDYRRRETRITARPANGREIELLSLAPGRAVLVL
ERLDVEPNGVPLQWGRSSFAADRVQLVFKA

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=233, Percent_Identity=31.3304721030043, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786950, Length=147, Percent_Identity=35.3741496598639, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788418, Length=236, Percent_Identity=26.6949152542373, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082252, Length=237, Percent_Identity=23.6286919831224, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29327; Mature: 29195

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTSRSLSTKGHNPMTEATQTKADGGASGHEGVARGSGVTLWRQIAQRLEEEIHSGVLK
CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PGARLPVEAELSETFGVNRHTLRRALAHLAEQGLIEATAGRGTFVKEPPLRYPIGARTRF
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHH
SEIVSAGGREPFGRFLGSKVEDACPDVARELAVPEGTPVLRIESIHEADGVPISFGTAWF
HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCCC
PHARLRDLDLVYAATGSLTRALATLGIEDYRRRETRITARPANGREIELLSLAPGRAVLV
CCCHHCCCEEEEECHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCEEEEEEECCCCEEEE
LERLDVEPNGVPLQWGRSSFAADRVQLVFKA
EEECCCCCCCCCCCCCCCHHHHHHEEEEECC
>Mature Secondary Structure 
SGTSRSLSTKGHNPMTEATQTKADGGASGHEGVARGSGVTLWRQIAQRLEEEIHSGVLK
CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PGARLPVEAELSETFGVNRHTLRRALAHLAEQGLIEATAGRGTFVKEPPLRYPIGARTRF
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHH
SEIVSAGGREPFGRFLGSKVEDACPDVARELAVPEGTPVLRIESIHEADGVPISFGTAWF
HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCCC
PHARLRDLDLVYAATGSLTRALATLGIEDYRRRETRITARPANGREIELLSLAPGRAVLV
CCCHHCCCEEEEECHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCEEEEEEECCCCEEEE
LERLDVEPNGVPLQWGRSSFAADRVQLVFKA
EEECCCCCCCCCCCCCCCHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]